UFO07726.5prime Sequence
1126 bp (1040 high quality bases) assembled on 2011-07-14
> UFO07726.5prime
CAGTCGACATGAACCGCTCCGGCAATTCCCAGACCACACAGAAACTCGTC
AACCTGGACGATATCTGGAGCGAATTGGTCGAGGGCATTATGCAGGTGTT
TGAGCACGAGAAGTCCCTCACCCGCAGCCAGTACATGCGTTTCTACACTC
ACGTCTATGACTACTGCACCAGCGTGAGCGCGGCTCCAAGCGGACGGAGC
AGCGGAAAGACAGGCGGAGCGCAGCTGGTGGGCAAGAAGCTGTACGACCG
GCTGGAACAATTTCTCAAGTCATACCTGAGCGAGCTGCTCACCAAGTTCA
AGGCCATCAGCGGCGAGGAGGTACTCCTGTCGCGCTACACCAAACAGTGG
AAGTCGTATCAGTTCTCCAGTACCGTTCTGGACGGCATCTGCAACTACCT
GAATCGGAACTGGGTGAAGCGCGAGTGCGAGGAGGGGCAGAAGGGTATCT
ACAAGATCTACCGACTGGCCCTCGTCGCCTGGAAGGGACATTTGTTCCAA
GTGCTAAATGAGCCGGTCACCAAGGCAGTGCTCAAGTCCATTGAGGAGGA
GCGTCAAGGCAAGCTCATTAACCGGTCGCTGGTCCGCGACGTTATCGAGT
GCTACGTGGAGCTCAGCTTTAACGAGGAGGATACCGATGCCGAGCAGCAG
AAGTTATCCGTCTACAAGCAAAACTTTGAAAACAAGTTCATCGCAGACAC
ATCAGCCTTCTACGAGAAGGAGTCGGACGCCTTTCTGTCCACCAACACGG
TCACCGAGTATCTGAAGCACGTCGAAAACAGGCTGGAGGAGGAGACGCAG
CGCGTCCGCGGCTTTAATTCAAAGAACGGTCTTTCCTATCTGCACGAGAC
CACAGCGGATGTGCTGAAGTCCACATGCGAAGAGGTTCTTATCGAAAAAC
ATCTGAAAATCTTTCACACCGAGTTTCAGATCTGCTCAACGCAGACCGAA
ACGATGATCTGAAACGGATGTACTCCTTGGTCGCCCTCTCGTCAAAACCT
GACAGATCCTCAAGTCCATCCTTGAGAACATATACTCCAACAGGGCACGG
AGGCCATTGCAAGGTGTGCCTACGAGCCGGCACGATCCAGAACGTACGTA
AGACATCTGAACGTCAAAAATAAGCC
UFO07726.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:23:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cul1-RD | 3184 | CG1877-RD | 367..1428 | 9..1067 | 5155 | 99.2 | Plus |
| Cul1-RA | 3207 | CG1877-RA | 390..1451 | 9..1067 | 5155 | 99.2 | Plus |
| Cul1-RB | 3886 | CG1877-RB | 388..1449 | 9..1067 | 5155 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:23:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7917964..7918841 | 9..886 | 4390 | 100 | Plus |
| 2R | 25286936 | 2R | 7918899..7919086 | 883..1067 | 685 | 95.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:23:16 has no hits.
UFO07726.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:31 Download gff for
UFO07726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lin19-RA | 382..1459 | 1..1073 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:15:45 Download gff for
UFO07726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lin19-RB | 380..1457 | 1..1073 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:04 Download gff for
UFO07726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cul1-RB | 380..1457 | 1..1073 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:04 Download gff for
UFO07726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7917956..7918839 | 1..884 | 99 | -> | Plus |
| 2R | 7918901..7919084 | 885..1063 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:15:45 Download gff for
UFO07726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3805461..3806344 | 1..884 | 99 | -> | Plus |
| arm_2R | 3806406..3806589 | 885..1063 | 95 | -> | Plus |
