UFO07727.5prime Sequence
982 bp (935 high quality bases) assembled on 2011-07-14
> UFO07727.5prime
CAGTCGACATGATGTCTTGCCCCATTCCCATGCCAATGCCAATTTCTTCA
TTACACAAATCAGAATTTGAACCGGTTAATATTGGAGTTAAGCAAATGCA
ATTGTTGCACGCACCGGCGTCCACGCATCCGCATCCACATCCGCATCAGC
ATCCGCAGCATTCGGCAGCGTCAGCCGCCGCCTATCAGGCCATGCAGGTG
CACCAGCAGCAACACCAACAGCAACAGCAGGCGGCCGTCTTTCACCACCA
GGTTGCAGCCATTGCCGCCCAGCAGCAACAACAGCAACAGCAGGCCCAAG
TGCAGCATCAGCAACAAATGCAGCAGCAGTTCCACTACCAAGCCCAGGCT
CAAGCTCAAGCGCAGGCCATGCTGCAGACGTATATGCAACTTCAGGTGAA
CAGTGCTGTAGGTGTGAGCACCGCCCCCGCCACGCCTACCAAACCGGTAG
CCGCCCAGATTCCGGGCGCGATCTCCGGACCGATTGCGGGTCCGGTTCCT
GTATCTGTGCCGACACAGTTCTTCACGGCGCCGAGCACTCCATTGACCAT
CATTCCGGCGGCGGCGGTGGCCTCGTCGGCCATGTTCGCTACCGCGGCCA
CGCCCACTTCGGCGGCCACCACTCCGACCAATAATCGCGGAAGCGACGAA
CTTTTTGAGTCAAGCAGCGGTCATGGCGCCCGCTTCCGACAATAACAATC
AGGACCTGGCCACAAAGAAGGCCAAACTGGAGCCGGGCACTGTGCTGGCC
GGCGGAATTGCCCAGGCCTCAAAAGTCATCCACTTGCGCAACATTCCGAA
CGAGTCCGGCGAGGCAGATGTGATTGCCCTGGGCATTCCGTTTGGACGTG
TTGACCACGTTGCTGGTGCTCAGGGCAAGAACCAGGCTTTCATCGAGATG
GGCGACGAGATCTCGCAACGTCAATGGTGTCCTGTTACAACGTTACTCCG
CCCCAGGATGCGCGGCCGCATGGTCTTACGTG
UFO07727.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:23:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| heph-RR | 3496 | CG31000-RR | 291..1263 | 8..982 | 4600 | 98.6 | Plus |
| heph-RO | 3496 | CG31000-RO | 253..1225 | 8..982 | 4600 | 98.6 | Plus |
| heph-RH | 3496 | CG31000-RH | 253..1225 | 8..982 | 4600 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:23:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31932072..31932616 | 635..91 | 2725 | 100 | Minus |
| 3R | 32079331 | 3R | 31873884..31874100 | 976..760 | 775 | 94.5 | Minus |
| 3R | 32079331 | 3R | 31881748..31881871 | 760..636 | 575 | 99.2 | Minus |
| 3R | 32079331 | 3R | 31959035..31959119 | 92..8 | 410 | 98.8 | Minus |
Blast to na_te.dros performed 2014-11-27 00:23:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6670..6912 | 81..340 | 287 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2548 | 125..343 | 276 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6942 | 126..340 | 275 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2295..2531 | 98..347 | 272 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6677..6907 | 160..395 | 250 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..6886 | 194..341 | 237 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6891 | 151..328 | 234 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2442 | 201..327 | 233 | 70.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6929 | 195..396 | 228 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2438..2713 | 125..402 | 225 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6956 | 91..327 | 205 | 61.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2519 | 139..359 | 205 | 57.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2294..2428 | 188..328 | 196 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2805..2977 | 201..364 | 194 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6762..7091 | 91..425 | 188 | 56.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2470 | 151..328 | 182 | 60.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1043..1141 | 133..230 | 167 | 67 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3218..3381 | 128..289 | 166 | 61.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1045..1152 | 120..229 | 157 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1554..1645 | 201..289 | 154 | 68.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1066..1163 | 125..228 | 153 | 66.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1052..1162 | 173..293 | 150 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2845..2989 | 91..229 | 143 | 59.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2384..2610 | 125..361 | 142 | 57.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1084..1120 | 194..230 | 122 | 81.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2592..2662 | 163..229 | 121 | 66.2 | Plus |
UFO07727.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:31 Download gff for
UFO07727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| heph-RR | 284..1263 | 1..982 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:15:48 Download gff for
UFO07727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| heph-RH | 243..1222 | 1..982 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:06 Download gff for
UFO07727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| heph-RH | 246..1225 | 1..982 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:06 Download gff for
UFO07727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31873879..31874099 | 761..982 | 94 | <- | Minus |
| 3R | 31881748..31881871 | 636..760 | 99 | <- | Minus |
| 3R | 31932072..31932614 | 93..635 | 100 | <- | Minus |
| 3R | 31959035..31959125 | 1..92 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:15:48 Download gff for
UFO07727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27699601..27699821 | 761..982 | 94 | <- | Minus |
| arm_3R | 27707470..27707593 | 636..760 | 99 | <- | Minus |
| arm_3R | 27757794..27758336 | 93..635 | 100 | <- | Minus |
| arm_3R | 27784757..27784847 | 1..92 | 95 | | Minus |
