UFO07728.5prime Sequence
1114 bp (1022 high quality bases) assembled on 2011-07-14
> UFO07728.5prime
CAGTCGACATGTGCGACTTTGACGCTTTGTGGGCGGATGTACTGAGAATC
TTTCCGGTTTTGGGTGGAGCGAACGCTGTATCCAATGATCCGGTTGAGGA
GAATGTATTCCAAAATGTTCGCCAGCACCTGATGGTGTTGGGCAGCATAG
ACACCTTCGCGGCGGTTGTGGACCTGGAAATCCAGTCGACTATTCGGAAT
GTCCTGGTGCCCAAGTTCTGGAAGCACATCCACGACGGCTTGGTCTCGTC
TAAATTGCAGGGCTGGATTAACGACCAAGCTCTGGCCATAGAAGCACTGC
CCGATAAGAACGGACTGTTCACCCAGTTCATCGACGCCATCAATGAGCTG
CATGACAGCTTTCAGAGCCTGATGCAGGTGAAGCCCAGGCTGATCCAGCT
AGTTGGAGCTGAGACAAAGCCCACCGCAAAGACGGTGAAGCTCATGCAGG
AGGAAGGCATTAAGAACTGCTTAAGGGACTGCTTGCTGGCTCAACTGCCA
CCCAATTTCAGTGTGGTCGTTGGGGCCTTCTACTGGGTGCACTTTAAGCT
CTTCACCAAGGCCTCAAATCTCGCATTGACCACAGTTGACTCTGATGTTT
TCGATGAGCTCCTCTGCGTTGGCTGCAACTTCGAAGCAGAGCAATGCTGC
TGCCAAAGGCTGACGGATATGGTTAACAAGACAAACATGAAGCTCTTCGA
GATGAACCTCATTGACCGTCTAACTGGGAGTGCTTTAACCGCTCTCATCA
AGCTTAAAATCAAGGAGCACATCAGCGATACATGCATGGGAATCTTCGAC
AGAAGTCATCTTAAGCAACTGGAAACTTGGCTATCGGATGTCATAATGTC
CTGTCTCACAAACATATTCACGGAATGGAAGTCTAAGATAGCATAAGCGA
TATCGAAGTTCCCGAGTCTGTAAAATCCTTCAAGTCAAACTGACTTACTT
TATGTACGAAACGTTTGCCCAAAGCGTTATTGGTCAGTCTTCAGCATTAT
ATTGACTATCCGGATTCCATTCCGGCTATGATGACCTAAAGATTGCATGG
AGAAAAAAGAATGGCAGTCTACCTCCACTGATTCCTAGACTCGCTGAGCA
AGGATTGCATCCTG
UFO07728.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:23:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mr-RA | 2555 | CG3060-RA | 79..1198 | 9..1114 | 5130 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:23:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23972632..23973149 | 71..588 | 2590 | 100 | Plus |
| 2R | 25286936 | 2R | 23973205..23973444 | 588..827 | 1200 | 100 | Plus |
| 2R | 25286936 | 2R | 23973520..23973696 | 828..1001 | 720 | 97.7 | Plus |
| 2R | 25286936 | 2R | 23972509..23972571 | 9..71 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:23:29 has no hits.
UFO07728.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:32 Download gff for
UFO07728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mr-RA | 71..1155 | 1..1081 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:15:51 Download gff for
UFO07728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mr-RA | 73..1157 | 1..1081 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:09 Download gff for
UFO07728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mr-RA | 73..1157 | 1..1081 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:09 Download gff for
UFO07728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23972503..23972571 | 1..71 | 94 | -> | Plus |
| 2R | 23972633..23973149 | 72..588 | 100 | -> | Plus |
| 2R | 23973206..23973444 | 589..827 | 100 | -> | Plus |
| 2R | 23973520..23973700 | 828..1004 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:15:51 Download gff for
UFO07728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19860026..19860094 | 1..71 | 94 | -> | Plus |
| arm_2R | 19860156..19860672 | 72..588 | 100 | -> | Plus |
| arm_2R | 19860729..19860967 | 589..827 | 100 | -> | Plus |
| arm_2R | 19861043..19861223 | 828..1004 | 97 | -> | Plus |
