UFO07731.5prime Sequence
1108 bp (1019 high quality bases) assembled on 2011-07-14
> UFO07731.5prime
CAGTCGACATGGCGGATGCCGCAGCACGTCAGCTGCAATACGAGTACAAG
GCGAACTCCAATCTTGTGCTGCAAGCCGATGTCCGACTCATCGAACGTCC
GCGCCGCGATGAGGCCACTGGCGAGGTGTGTTCCCTGGTGGGAAAGCTGG
ACGGAACAAGGATGGGAGATCGGTACCAGCGAACGAAGCCGGAGAAAACG
GAGGAGCGCAAGGTGAAACGTCAGAAGCGCGACGAGGCCCAGTACGATTT
CGAGCGGATGAAGGGAGCCACTCTGCTCTCCGAGGGCATTGACGAGATGG
TGGGCATTGTGTATCGACCCAAGACCCAGGAAACTCGTCAGACCTACGAG
GTCCTGCTCAGTTTCATCCAGGAGGCTCTGGGGGATCAGCCCAGGGATAT
CCTGTGCGGTGCCGCTGATGAGATTCTGGCTGTCCTCAAGAACGATCGTT
TAAAGGATCGGGAGCGAAAGAAGGATATAGACAGCTTGCTGGGCGCAGTT
ACAGATGAGCGATTCGCTCTGCTGGTTAACCTGGGCAAAAAAATCACAGA
CTTTGGCAGCGATGCCGTGAATGCTTTGACTGCTGCTCCCAACAACGAGG
AGCAGATCGATGAAACCTACGGCATCAATGTTCAGTTTGAGGAATCCGAA
GAGGAGAGCGACAACGACATGTATGGCGAGATTCGCGACGATGATGCCCA
GGATGAAGGAGAGGAGGCCCGCATTGATCACACACTGCATGCAGAGAATC
TAGCCAACGAGGAAGCCGCAAATAATGTAAAGAAAGAGCGCTCCTTGCAT
CCTCTGGACATAGATGCGTATTGGTTTGCAGCGTTGTCTGAGCAAGTTCT
ACAAGGACGCCATGGTGTCGCAAAGCAAAGCCGCCGATGTGTTGAAGATC
CTCAAAGATGCCGCCGACGATCGCGATTGCGAAAATCAATTGGTGCTTCT
GCTGGGCTACGATTGCTTTGACTTCATTAAGCAATTGAAGCTTACGCAGA
TGGTCCTGTACTGCACCATGCTCGCCTCGCCAACGACAGCGAAGCGCAAA
GGATTCGCGAAGATGCGCGGAATTCTGCGTTGCCAATCTCGCATGGATCG
AGTCAAGA
UFO07731.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:23:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)72Ab-RA | 6707 | CG5931-RA | 118..1203 | 6..1082 | 5145 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:23:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15966916..15967612 | 749..53 | 3485 | 100 | Minus |
| 3L | 28110227 | 3L | 15966577..15966858 | 1029..750 | 1270 | 98.2 | Minus |
| 3L | 28110227 | 3L | 15967708..15967755 | 53..6 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:23:43 has no hits.
UFO07731.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:34 Download gff for
UFO07731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5931-RA | 100..1196 | 1..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:15:59 Download gff for
UFO07731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)72Ab-RA | 116..1212 | 1..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:13 Download gff for
UFO07731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)72Ab-RA | 116..1212 | 1..1090 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:13 Download gff for
UFO07731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15966508..15966858 | 750..1090 | 95 | <- | Minus |
| 3L | 15966916..15967611 | 54..749 | 100 | <- | Minus |
| 3L | 15967708..15967757 | 1..53 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:15:59 Download gff for
UFO07731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15959608..15959958 | 750..1090 | 95 | <- | Minus |
| arm_3L | 15960016..15960711 | 54..749 | 100 | <- | Minus |
| arm_3L | 15960808..15960857 | 1..53 | 94 | | Minus |
