UFO07733.5prime Sequence
1113 bp (1030 high quality bases) assembled on 2011-07-14
> UFO07733.5prime
CAGTCGACATGTCTGGAAGAGGAAATTTGTTGAGCTTATTTAATAAAAAT
GCTGGCAATATGGGAAAATCAATTTCAAGTAAAGATCATGAAATCGACAG
TGGCTTGGATTTTAACAACTCTGAATCAAGTGGAGAACGTTTACTGTCAA
GCCATAATATTGAAACTGATCTTATAACCACTCTTCAACATGTAAACATC
TCGGTCGGCCGAGGACGTGCTAGGCTTATAGACACATTAAAAACAGATGA
CCATACATCAAATCAATTTATAACATCTGAATCAAAGGAAAACATTACCA
AAAAGACAAAGGGCCCCGAATCGGAAGCAATTGCTTCAGAAAATGGATTA
TTTTTTCCCGATTTAATTTACGGATCTAAAGGTTCATCTGTTAATATATA
TTGTAATTACTTAAAGCTAACGACGGATGAATCCAAGGGAGTTTTTAATT
ACGAAGTGCGTTTTTTTCCTCCCATTGACTCTGTTCATTTAAGAATAAAA
TATTTAAATGATCATAAGGATAAACTCGGTGGAACCAAGACATTTGACGG
AAATACTTTATATTTACCTATTTTGTTACCAAATAAGATGACCGTCTTTA
TTTCAAAGGCGGAAGATGTTGAGTTGCAGATTCGCATTTTATACAAAAAA
AAAGAGGAAATGAGGAACTGCACGCAATTATATAATATTTTATTCGATAG
AGTTATGAAAGTATTGAATTACGTAAAATTTGATCGCAAGCAGTTTGATC
CTTCGCGTCCAAAAATAATACCACTGGCAAAGTTAGAAGTTTGGCCTGTC
TATGTTACAGCCGTTGACGAATACAAAGGTGGTTTAATGCTATGCTGCGA
CGTTTCGCATCGTATACTTTGCCAAAAAACTGTTCTAGAATGCTGGTTGA
TCTTTATCAGCAAAATGTAGAGCATTACCAAGAATCAGCAGAAAATGTTG
GTTGGAAATATTGTCTTAACTAGTATACCAATCGTACAATAAAATAAATG
ACATTTGTTTTGATCAAAATCCAACATGTCAGTTGAAATAAAACCTGGCT
GCCAAGTACTGGAGATTACAACCATATCCAAATAAACCTAGACGTAATCA
ATTGATTACGTAG
UFO07733.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:23:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AGO3-RG | 2728 | CG40300-RG | 127..1219 | 8..1087 | 5065 | 98.4 | Plus |
| AGO3-RF | 2773 | CG40300-RF | 100..1192 | 8..1087 | 5065 | 98.4 | Plus |
| AGO3-RE | 2974 | CG40300-RE | 301..1393 | 8..1087 | 5065 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:23:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 23568545..23569223 | 380..1052 | 3055 | 98.4 | Plus |
| 3L | 28110227 | 3L | 23566841..23567216 | 8..383 | 1880 | 100 | Plus |
| 3L | 28110227 | 3L | 23626536..23626903 | 383..8 | 1725 | 97.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:23:53 has no hits.
UFO07733.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:35 Download gff for
UFO07733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AGO3-RF | 78..1134 | 8..1057 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:16:04 Download gff for
UFO07733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AGO3-RE | 298..1357 | 1..1057 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:17 Download gff for
UFO07733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AGO3-RE | 298..1357 | 1..1057 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:17 Download gff for
UFO07733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 23566836..23567214 | 1..381 | 99 | -> | Plus |
| 3L | 23568547..23569229 | 382..1057 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:16:04 Download gff for
UFO07733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 23559936..23560314 | 1..381 | 99 | -> | Plus |
| arm_3L | 23561647..23562329 | 382..1057 | 98 | | Plus |
