UFO07735.5prime Sequence
1015 bp (962 high quality bases) assembled on 2011-07-14
> UFO07735.5prime
CAGTCGACATGGTGGTTTTAGAAACTGCCAGCGCCCTTTTGGGCGGCCCG
TATGCCCAGGGCGCTCCCGCCCTGAAAATGGTGCAGAAACGCTACATTGG
ATTACATCACTGGCTGGGACCAATCCGCTCCAAGGAGCTAAAGGAGCATA
TTGTAAGTGACGACGTGCTTTCGCTCGCTTTTAACCACAATCAACAACTG
TTTCGCTCGCAGAATCCGGGCCTAGCAGCAGTTGCCACAAATGCAGCGGC
CGCAGCAGCAGCCGCAGCAGCTGCCACATCGGCAGCGAGTGCTGCGGCAG
CGGTGGGCGCACCACCCGTTCCCAACGGATCGCTGCAGCAGTCGCAGCAG
CAACAGCAGCAGCAGCAACAACAGCAGCAGCAACAACAGATGCACATGGC
GGCCGCGTCGCAACAATTTTTGGCCGCCCAGCAGCAGGCGCAAAATGCGG
CCTATGCCGCCCAACAGGCCACGTCCTACGTCATCAATCCGGGCCAGGAG
GCTGCCCCGTATATGGGCATGATTGCCGCCGCCCAGATGCCGTACTATGG
CGTAGCACCATGGGGCATGTATCCGGGCAATCTGATTCCGCAACAGGGAA
CGCAGCCGCGCCGCCCCCTCACCCCCTCGCAGCAGGGTGCCGAGAATCAG
CCGTATCAGGTCATCCCGGCATTCCTCGATCACACGGGCTCCTTGCTGAT
GGGAGGACCTCGCACCGGGACGCCGATGCGTCTGGTTAGCCCCGCCCCCG
TTCTGGTGCCCCCGGGCGCTACCCGTGCCGGCCCCCCGCCCCCGCAGGGC
CCACAGCTGTATCAGCCGCAGCCGCAGACGGCCCAACAGAATCTCTACTC
GCAGCAGAATGGATCCAGTGTCGGAGGCCTCGCCTTGAACACGAGCTCGT
TGACGGGTCCGCGCGGACTCCTTCGACCGCAGCCACCTCCGCCTTCGTCC
CTCGACCATGGGACTACACCACCACAGGGGTGGCAACCGCTCGCCAAATG
GGGGTGAACAGACAA
UFO07735.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:23:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pum-RE | 4685 | CG9755-RE | 690..1687 | 9..1011 | 4695 | 98.3 | Plus |
| pum-RG | 10223 | CG9755-RG | 2996..3811 | 191..1011 | 3770 | 97.8 | Plus |
| pum-RB | 7473 | CG9755-RB | 1481..2296 | 191..1011 | 3770 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:23:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9080556..9081022 | 661..195 | 2335 | 100 | Minus |
| 3R | 32079331 | 3R | 9079744..9079964 | 877..657 | 1090 | 99.5 | Minus |
| 3R | 32079331 | 3R | 9157111..9157261 | 159..9 | 755 | 100 | Minus |
| 3R | 32079331 | 3R | 9072923..9073031 | 985..875 | 270 | 91.1 | Minus |
| 3R | 32079331 | 3R | 9098696..9098737 | 194..153 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:23:07 has no hits.
UFO07735.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:29 Download gff for
UFO07735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pum-RE | 82..1064 | 1..985 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:15:39 Download gff for
UFO07735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pum-RE | 682..1664 | 1..985 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:01 Download gff for
UFO07735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pum-RE | 682..1664 | 1..985 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:01 Download gff for
UFO07735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9079745..9079961 | 660..876 | 99 | <- | Minus |
| 3R | 9080558..9081022 | 195..659 | 100 | <- | Minus |
| 3R | 9098696..9098737 | 153..194 | 100 | <- | Minus |
| 3R | 9157118..9157267 | 1..152 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:15:39 Download gff for
UFO07735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4905467..4905683 | 660..876 | 99 | <- | Minus |
| arm_3R | 4906280..4906744 | 195..659 | 100 | <- | Minus |
| arm_3R | 4924418..4924459 | 153..194 | 100 | <- | Minus |
| arm_3R | 4982840..4982989 | 1..152 | 97 | | Minus |
