UFO07737.5prime Sequence
1122 bp (1030 high quality bases) assembled on 2011-07-14
> UFO07737.5prime
CAGTCGACATGGCATCAATATCGGATGACGGCATGGCGCTGAGTGGCTAC
CTCAAGAAGCTGAAGACCATGAAGAAGAAGTTCTTTGTGCTGTACGAGGA
GACGAGCACTTCGGCAGCCCGGCTGGAGTACTACGATACCGAAAAGAAGT
TCCTGCAAAGAGCCGAGCCAAAAAGGGTTATATATCTGAAGAATTGCTTC
AACATCAATCGCCGTTTGGACACCAAGCATAGATTTGTCATTGTGCTCTC
CTCCAGAGACGGTGGATTCGGCATCGTTCTCGAGAACGAAAATGATTTAC
GCAAATGGTTGGACAAACTACTAGTTCTACAAAGGAACATAGCCAATTCG
AATGGAACAGCGCACTCACCTTATGACCACGTTTGGCAAGTTGTCATTCA
AAAGAAGGGTATTTCGGAGAAAGTTGGAATCACCGGAACCTACCACTGTT
GCCTTACTTCAAAATCCCTGACATTCGTGTGCATTGGACCGGAGAAGACG
CCCAATGGCGAGGATCGCGTTGCGAGCATTGAAATACTTTTGACCACGAT
CAGGCGATGCGGTCATGCATCCCCACAATGTATATTCTACGTGGAACTTG
GCCGCCAAAGTGTCTTGGGATCTGGTGATCTGTGGATGGAGACGGATAAC
GCAGCTATTGCTACTAATATGCACAACACGATACTGAGCGCTATGTCAGC
CAAAACAGAGTCGAACACGAATTTAATAAACGTTTATCAGAATAGACCTG
ACTTAAGTCACGAGCCCATGAGAAAGCGATCGTCGTCTGCAAACGAAGCA
TCGAAGCCGATAAACGTAAATGTCATACAAAATAGTCAAAACTCTCTCGA
ATTGCGCAGCTGCAGTTCGCCCCATAACTATGGTTTCGGCAGAGAGAGAT
GCGATAGCTTACCAACCAGAATGGAACCCTAAGCGAGTCCAGCAATCAAA
CGTACTTTGGTTCCAACCATGGACTGCGATCAATACTATATCTGGGCATC
CGTCCGCACTCACACAGCATAGTAATAGTCCAACGTTCACATGCCATTTA
GATGCCTCAGAATCCGAGAAGTTCATCATTATTTGCGATGAATTCGACCG
ACACGCAGTTTAGCCTACGATT
UFO07737.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:24:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| chico-RC | 3578 | CG5686-RC | 546..1641 | 8..1098 | 5125 | 98.4 | Plus |
| chico-RB | 3104 | CG5686-RB | 72..1167 | 8..1098 | 5125 | 98.4 | Plus |
| chico-RA | 3229 | CG5686-RA | 197..1292 | 8..1098 | 5125 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:24:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10245655..10246022 | 375..8 | 1840 | 100 | Minus |
| 2L | 23513712 | 2L | 10244908..10245105 | 884..687 | 990 | 100 | Minus |
| 2L | 23513712 | 2L | 10245410..10245591 | 556..375 | 910 | 100 | Minus |
| 2L | 23513712 | 2L | 10245220..10245352 | 688..556 | 665 | 100 | Minus |
| 2L | 23513712 | 2L | 10244664..10244854 | 1067..882 | 575 | 93.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:24:14 has no hits.
UFO07737.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:38 Download gff for
UFO07737.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chico-RB | 58..1125 | 8..1068 | 98 | -> | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:16:15 Download gff for
UFO07737.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chico-RA | 197..1264 | 8..1068 | 98 | -> | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:25 Download gff for
UFO07737.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chico-RA | 197..1264 | 8..1068 | 98 | -> | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:25 Download gff for
UFO07737.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10244661..10244853 | 883..1068 | 93 | <- | Minus |
| 2L | 10244910..10245103 | 689..882 | 100 | <- | Minus |
| 2L | 10245220..10245351 | 557..688 | 100 | <- | Minus |
| 2L | 10245410..10245590 | 376..556 | 100 | <- | Minus |
| 2L | 10245655..10246022 | 8..375 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:16:15 Download gff for
UFO07737.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10244661..10244853 | 883..1068 | 93 | <- | Minus |
| arm_2L | 10244910..10245103 | 689..882 | 100 | <- | Minus |
| arm_2L | 10245220..10245351 | 557..688 | 100 | <- | Minus |
| arm_2L | 10245410..10245590 | 376..556 | 100 | <- | Minus |
| arm_2L | 10245655..10246022 | 8..375 | 100 | | Minus |
