UFO07739.5prime Sequence
1117 bp (1008 high quality bases) assembled on 2011-07-14
> UFO07739.5prime
CAGTCGACATGGTTACATATCACTTTCGGTCAAGCCTAACTCAGTTTAGT
GTGCCACAGCTCGAAGCGCCAAGTGGCGAAAGTGCAAAGCGCAGCAAAGT
GCGAAAAGAAGGCAACAAGTCGAATATGAACACAAACAGTCCCAGCAAAA
ATGTGACTGTGAAATCGTCACAGCTATATAGGTATATAGCGCCCAGGAAC
CGATCCATGCTTGTCATGAAGGATCCACGGAGCATGCGAACCTTACGACG
AATGCCAAAACCTGGAAGCAATGAAATGGGAACAACCAGTGACTGCGCTG
CGAGTTTGTCACAGCAAATAAAGGCGGTCTCCAGTCCAACGCTGTCCGAG
CCGTGCTTAGAGGAGCAGCCACAAAAAGGAACTGAAAGTACGGATGTGGC
CAACACAGGCAGCAGCGCCGGAAGTGGAGGCCTAGGCGTATTGCAGAAAT
TCAAACGCACCTTGAACAACTTTAACAACAAAAATCAATTGCACATCTCT
CCGCTATCACCAGCGGCAGTAGGTAACAATGCCCCAAAAACTAAGACATC
GCCAACAACAACAACCGCATCCATAGCACCTATGATAACGACGACCACAG
CTAGCGATCCTGGCTCAGAGGCCGGCGATACGAGCTCAGGAAAATACCGG
TTTGGGCCCCTTATTTGGCGTTCTTCCAAAGAACGCCGTAAGACGAAGTA
CAACCGACGCGACAAGTGTAATTCTGGTGATTCACGCATACAGATCGAAC
TAGAACAGGATGAGCAATACTCCCGTGCGACAATGGCCGTGAGCCGCCAG
GATGAGCCCCGCGCTTTTGCGTTAACCAATGGATCGTGTGGTGTCGCGCT
CTCTAAAATGCGAGCCATACGTCGCACCAACTCTGCAAAGGCGAGCAGCA
TCCTTGGGCCCTTTATGTAAAACCAAAATAGCCAAGCACTTAAACATTGG
AGAGTCTGACAAGCCGAGCGCAAAGGCGCCGAGTCTCTACCCACGCGATC
GCTTAGCCACGACGACTAAAGTCTTACGGTATGGGTCGTCCCGAATCTTG
AAGAATGCGGACAGCGGATATTGTCGCGTCAAACGAGAAGCCTAAGCTTC
TACAACCACATGGCGGA
UFO07739.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:21:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoGEF3-RF | 3564 | CG43976-RF | 97..1197 | 9..1103 | 5050 | 97.9 | Plus |
RhoGEF3-RA | 4541 | CG43976-RA | 97..1197 | 9..1103 | 5050 | 97.9 | Plus |
RhoGEF3-RM | 12307 | CG43976-RM | 8104..8963 | 250..1103 | 3845 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:21:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 300894..301677 | 308..1087 | 3345 | 97.1 | Plus |
3L | 28110227 | 3L | 297898..298139 | 9..250 | 1210 | 100 | Plus |
3L | 28110227 | 3L | 298958..299016 | 250..308 | 295 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 00:21:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2303..2387 | 520..603 | 116 | 61.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2432 | 506..594 | 113 | 61.8 | Plus |
UFO07739.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:16 Download gff for
UFO07739.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGEF3-RF | 72..1184 | 1..1109 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:14:42 Download gff for
UFO07739.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGEF3-RA | 93..1205 | 1..1109 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:20 Download gff for
UFO07739.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGEF3-RA | 93..1205 | 1..1109 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:20 Download gff for
UFO07739.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 297894..298139 | 1..250 | 98 | -> | Plus |
3L | 298959..299016 | 251..308 | 100 | -> | Plus |
3L | 300895..301688 | 309..1099 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:14:42 Download gff for
UFO07739.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 297894..298139 | 1..250 | 98 | -> | Plus |
arm_3L | 298959..299016 | 251..308 | 100 | -> | Plus |
arm_3L | 300895..301688 | 309..1099 | 96 | | Plus |