Clone UFO07739 Report

Search the DGRC for UFO07739

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:77
Well:39
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptRhoGEF3-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO07739.5prime Sequence

1117 bp (1008 high quality bases) assembled on 2011-07-14

> UFO07739.5prime
CAGTCGACATGGTTACATATCACTTTCGGTCAAGCCTAACTCAGTTTAGT
GTGCCACAGCTCGAAGCGCCAAGTGGCGAAAGTGCAAAGCGCAGCAAAGT
GCGAAAAGAAGGCAACAAGTCGAATATGAACACAAACAGTCCCAGCAAAA
ATGTGACTGTGAAATCGTCACAGCTATATAGGTATATAGCGCCCAGGAAC
CGATCCATGCTTGTCATGAAGGATCCACGGAGCATGCGAACCTTACGACG
AATGCCAAAACCTGGAAGCAATGAAATGGGAACAACCAGTGACTGCGCTG
CGAGTTTGTCACAGCAAATAAAGGCGGTCTCCAGTCCAACGCTGTCCGAG
CCGTGCTTAGAGGAGCAGCCACAAAAAGGAACTGAAAGTACGGATGTGGC
CAACACAGGCAGCAGCGCCGGAAGTGGAGGCCTAGGCGTATTGCAGAAAT
TCAAACGCACCTTGAACAACTTTAACAACAAAAATCAATTGCACATCTCT
CCGCTATCACCAGCGGCAGTAGGTAACAATGCCCCAAAAACTAAGACATC
GCCAACAACAACAACCGCATCCATAGCACCTATGATAACGACGACCACAG
CTAGCGATCCTGGCTCAGAGGCCGGCGATACGAGCTCAGGAAAATACCGG
TTTGGGCCCCTTATTTGGCGTTCTTCCAAAGAACGCCGTAAGACGAAGTA
CAACCGACGCGACAAGTGTAATTCTGGTGATTCACGCATACAGATCGAAC
TAGAACAGGATGAGCAATACTCCCGTGCGACAATGGCCGTGAGCCGCCAG
GATGAGCCCCGCGCTTTTGCGTTAACCAATGGATCGTGTGGTGTCGCGCT
CTCTAAAATGCGAGCCATACGTCGCACCAACTCTGCAAAGGCGAGCAGCA
TCCTTGGGCCCTTTATGTAAAACCAAAATAGCCAAGCACTTAAACATTGG
AGAGTCTGACAAGCCGAGCGCAAAGGCGCCGAGTCTCTACCCACGCGATC
GCTTAGCCACGACGACTAAAGTCTTACGGTATGGGTCGTCCCGAATCTTG
AAGAATGCGGACAGCGGATATTGTCGCGTCAAACGAGAAGCCTAAGCTTC
TACAACCACATGGCGGA

UFO07739.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:21:41
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGEF3-RF 3564 CG43976-RF 97..1197 9..1103 5050 97.9 Plus
RhoGEF3-RA 4541 CG43976-RA 97..1197 9..1103 5050 97.9 Plus
RhoGEF3-RM 12307 CG43976-RM 8104..8963 250..1103 3845 97.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:21:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 300894..301677 308..1087 3345 97.1 Plus
3L 28110227 3L 297898..298139 9..250 1210 100 Plus
3L 28110227 3L 298958..299016 250..308 295 100 Plus
Blast to na_te.dros performed 2014-11-27 00:21:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2303..2387 520..603 116 61.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2347..2432 506..594 113 61.8 Plus

UFO07739.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:16 Download gff for UFO07739.5prime
Subject Subject Range Query Range Percent Splice Strand
RhoGEF3-RF 72..1184 1..1109 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:14:42 Download gff for UFO07739.5prime
Subject Subject Range Query Range Percent Splice Strand
RhoGEF3-RA 93..1205 1..1109 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:20 Download gff for UFO07739.5prime
Subject Subject Range Query Range Percent Splice Strand
RhoGEF3-RA 93..1205 1..1109 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:20 Download gff for UFO07739.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 297894..298139 1..250 98 -> Plus
3L 298959..299016 251..308 100 -> Plus
3L 300895..301688 309..1099 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:14:42 Download gff for UFO07739.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 297894..298139 1..250 98 -> Plus
arm_3L 298959..299016 251..308 100 -> Plus
arm_3L 300895..301688 309..1099 96   Plus