UFO07741.5prime Sequence
1127 bp (1040 high quality bases) assembled on 2011-07-14
> UFO07741.5prime
CAGTCGACATGACGCTGAACGAGAGCGACGCTACTCGCCTGGAGCTGACG
CGCAACTTCCTGGAACTGTCTCGAAATCCGGAAACATGCACCGCCCTGCG
CAGCTCGGACTGTATCCAGCTTCTGGTGCAGATTCTGCACGCCAACGACG
AAGGCCTCTCCACGGCGAAAAAGTACGCCAGCCAGGCGCTGCACAACATC
GTCCACAATAATCCGGAGGAGAAGGAGCGCCAGCGGGAGGTGAAGATGCT
GCGCCTGCTGGACCAGATCCTCGACTACTGTAACTTTCTGCACACCCAGT
TGCAGAGCGGCGGTGAGGCTATCGCAGATGATGAAGATCGTCATCCGCTG
GCGGCTATGAAGCTCCTGATGAAAGCCAGTTTCGACGAGGAGCACCGCCA
GACTATGTGCGAACTGGGAGCCCTCAAGGCGATTCCCAATTTGGTCCACC
TTGATCATGCGGTCCATGGACCGGCTGCCGGTAGGGAACAGTGCAACGCC
CTCAGGAGCTACGGCCTCATGGCCCTCACGAATCTCACCTTCGGAGACGA
GAACGTCCATAACAAATCGTATCTGTGCGGTCAGCGACAGTTCATGGAAG
TGGTCATTGCTCAATTGAACACGGCTCCGGATGAACTGCTACAGGTTCTT
GCTGGTGTGCTTCGCAATCTTTCGTGGCGCGCGGACAAACACATGAAGAC
TATCTTTAACGAGCTGGGTACTGTGACCTCCTTGGCTCGAGCAGCCATGC
AAAACAAGAACGAGAACACTCTCAAGGCCATACTTTCAGCCCTTTGGAAT
CTCTCAGCGCACTGCAGCACCAACAAGGCGGAGTTTTGTGCAGTAGACGG
AGCACTGGCATTTTTGGTCGGAATGCTTAGCTACGAGGGTCCGAGTAAAA
CTCTTAAGATCATCGAAAATGCAGGCGGCATTCTTCGAAATGTATCGAGC
CATATTGCGGTGTGTGAGCCGTACCGACAAATCCTAGGACGGTAAATTGC
CTTGCCATTCTGTTGCACAGATGAAATCGGAGAAGCCTAACCGGGTAAGC
AACTCCTGCGAACTTCTGTTGAATCTCTCGGCCGGCCTTGTCCGAGAACA
GACATACTCATGGAACCAAATTGCATC
UFO07741.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:21:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Apc2-RA | 3538 | CG6193-RA | 209..1284 | 9..1082 | 5195 | 99.2 | Plus |
| Apc-RB | 8317 | CG1451-RB | 985..1856 | 183..1058 | 810 | 73.8 | Plus |
| Apc-RA | 8441 | CG1451-RA | 1109..1980 | 183..1058 | 810 | 73.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:21:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24164174..24164811 | 9..646 | 3190 | 100 | Plus |
| 3R | 32079331 | 3R | 24164870..24165312 | 642..1082 | 1930 | 97.7 | Plus |
| 3R | 32079331 | 3R | 28839110..28839906 | 985..183 | 680 | 72.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:21:48 has no hits.
UFO07741.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:17 Download gff for
UFO07741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Apc2-RA | 202..1291 | 1..1093 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:14:47 Download gff for
UFO07741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Apc2-RA | 204..1293 | 1..1093 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:25 Download gff for
UFO07741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Apc2-RA | 204..1293 | 1..1093 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:25 Download gff for
UFO07741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24164169..24164809 | 1..644 | 99 | -> | Plus |
| 3R | 24164873..24165321 | 645..1093 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:14:47 Download gff for
UFO07741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19989891..19990531 | 1..644 | 99 | -> | Plus |
| arm_3R | 19990595..19991043 | 645..1093 | 97 | | Plus |
