UFO07742.5prime Sequence
1089 bp (979 high quality bases) assembled on 2011-07-14
> UFO07742.5prime
CAGTCGACATGAAGTTTCCGGATTATGTTCCAAACAACATGTTGGTGGGT
GATCGAACCACATGGGAGTACCACACGGTGGCGGTGACTCGGGTGCCTGG
CTATGGATTCGGCATCGCCGTTTCCGGTGGACGTGATAATCCGCACTTCG
CCAACGGCGATCCCTCGATAGCAGTTAGCGATGTGCTGAAAGGTGGCCCC
GCCGAGGATCGATTGCAAGTCAACGATCGGATAATCTCGGTGAACGGCGT
CTCTCTGGAGAACGTGGAATATGCTACCGCGGTGCAGGTGTTACGCGATA
GTGGCAACACGGTGCAATTGGTGGTCAAGCGTCGCGTGCCCCTCAATCCC
ATTAATGCTGCAGGTGCAGTGCAGCATCAGCATTCACACAGTCTCAGTTC
GGTTGGTCTAATGGCCAATGGAAGTGGAGGAGTGGCGCCAACCCCCATTA
CGAGTCTGAGTCAACCCAACTCGCTGAACTCTTCCCTAGTGCAGAATGCC
AGCAGTGGTCAGCCCATCAAGGTGACCCTCACCAAAGGCGGAAAGAAAGA
TGACTATGGTGTGGTGCTCGGCTGCCGGCTGTTTGTTAAGGAGATCTCCT
CTAAAGCTCGCGAGCAACTAAATGCCAATGGTTATAGCTTGCAAGAGGGT
GACATCATCACCCGCATCCACAATACTAACTGCGGGGATACGATGAGTCT
TAAGGAGGCGAAAAAGATCATTGATGGCTGCAAGGAGCGATTGAACCTAG
TGGTTCTAAGGGACATTACCAACCAAACAGCTGTTAGCCAATTGAATCTG
AACAATTCAGCCAGCCACCAGGCGTCGGGAAATATATACGCCACGCATCA
GCCTCAGTATCCCGGATGTAGCAGCAGTAACAACAATCTTGAAGATCCAT
ATCTGCCGGGCGGAGCCAGTTACTCCTCGCAGAATCTGTACGTGCAACGC
ACTCGCACCTCATGGTCCCAATATCATGGCATACTGACGACGAAAGAGTA
TCTACGCGCGAGTCGCTCCGGGCCCATATGGATGGGTATCCTGCAGCAAC
TGATAGACCGTAACGGACTCGGCAGGATGCCATCCATCG
UFO07742.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:21:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pyd-RA | 7195 | CG43140-RA | 326..1404 | 9..1064 | 4785 | 97.5 | Plus |
| pyd-RM | 6058 | CG43140-RM | 1336..2414 | 9..1064 | 4785 | 97.5 | Plus |
| pyd-RG | 5048 | CG43140-RG | 326..1404 | 9..1064 | 4785 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:21:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8839884..8840614 | 948..218 | 3595 | 99.5 | Minus |
| 3R | 32079331 | 3R | 8842670..8842840 | 217..47 | 840 | 99.4 | Minus |
| 3R | 32079331 | 3R | 8844915..8844954 | 48..9 | 200 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:21:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| invader2 | 5124 | invader2 INVADER2 5124bp | 4304..4338 | 62..28 | 112 | 80 | Minus |
UFO07742.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:18 Download gff for
UFO07742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyd-RC | 317..1306 | 1..986 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:14:49 Download gff for
UFO07742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyd-RA | 318..1307 | 1..986 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:28 Download gff for
UFO07742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyd-RA | 318..1307 | 1..986 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:28 Download gff for
UFO07742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8839842..8840614 | 218..986 | 98 | <- | Minus |
| 3R | 8842670..8842839 | 48..217 | 99 | <- | Minus |
| 3R | 8844916..8844958 | 1..47 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:14:49 Download gff for
UFO07742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4665564..4666336 | 218..986 | 98 | <- | Minus |
| arm_3R | 4668392..4668561 | 48..217 | 99 | <- | Minus |
| arm_3R | 4670638..4670680 | 1..47 | 91 | | Minus |
