UFO07744.5prime Sequence
1121 bp (1016 high quality bases) assembled on 2011-07-14
> UFO07744.5prime
CAGTCGACATGAGCCTGAATCAGCACAGTGGACCCGGCCCGCCGTCGGAG
ATCTGCGGATTATCGGTGGACCAGGTGGACTCATCGGCCGCCTCCCCTTT
CATCTGGCCGAGCACAGCGGGTATGTGCACCACCGCCACCACCGTCACAA
CATCGACCAATGGAGACGCCACCGCGGAAGCACCAGTGAAACATCAGCCG
CTCCACAACGGCGGCTGGATCGGAAATGGTCTTCCGCCGGCGCCCGTGAC
GCGGACCATATCATCGGATCGCCTGGTCACCGGCAGCTCGTGTCGGGCGC
TGCGCACTGCCGTCTCAGCATTATACTCCGTGGATGACTTCGTCAAGGAG
AAAATTGGATCGGGATTCTTCTCGGAGGTTTACAAGGTCACACATCGTAC
AACCGGCCAGGTGATGGTGCTCAAGATGAATCAGTTGCGGGCCAATCGAC
CGAATATGCTGCGGGAGGTGCAGCTGTTGAATAAACTTTCGCATGCGAAT
ATATTGAGCTTCATGGGCGTTTGCGTGCAGGAGGGCCAACTGCACGCCCT
GACCGAGTACATCAACGGCGGCTCCCTGGAGCAGCTGCTGGCCAACAAGG
AGGTGGTGCTCAGCGCCACGCAGAAGATAAGACTGGCGCTGGGTATAGCG
CGCGGCATGTCCTACGTTCACGACGCGGGCATCTTTCACAGGGATCTGAC
GAGCAAGAATGTACTTATTCGCAATCTGGCCAACGATCAGTACGAAGCTG
TAGTGGGTGACTTTGGTCTAGCCGCAAAGATACCAGTCAAATCCAGAAAA
TCACGCCTTGAGACAGTCGGCTCACCGTATTGGGTCAGTCCGGAGTGCCT
GAAGGGCCAGTGGTACGATCAGACAAGCGATGTCTTCTCCTTTGGCATCA
TTCAATGCGAGATCATAGCCCGCATCGAAGCGGACCCGGAAATGATGCCG
CGCACGGCGTCGTTTGGACTGGACTACCTGGCATTTGTAGATTGTGTCCG
ATGGACACTTCCTCCTGTGTTTTACGTCTGGCCTCCTACTGCTGTCTTGT
ACAAAGCCAGAAACGACCCACCGTTCCCCGGATGTCACACAAAAGTTGAC
TTTGCTGTCTGGAAAATACAG
UFO07744.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:21:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cdi-RA | 5665 | CG6027-RA | 1099..2210 | 7..1119 | 5210 | 98.3 | Plus |
| cdi-RB | 6523 | CG6027-RB | 1099..2207 | 7..1119 | 5155 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:21:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19087403..19087784 | 388..7 | 1910 | 100 | Minus |
| 3R | 32079331 | 3R | 19049818..19050072 | 1047..794 | 1100 | 98 | Minus |
| 3R | 32079331 | 3R | 19050291..19050491 | 707..507 | 1005 | 100 | Minus |
| 3R | 32079331 | 3R | 19060713..19060836 | 508..385 | 620 | 100 | Minus |
| 3R | 32079331 | 3R | 19050146..19050233 | 793..706 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:21:57 has no hits.
UFO07744.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:18 Download gff for
UFO07744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cdi-RA | 1176..2295 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:14:51 Download gff for
UFO07744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cdi-RA | 1176..2295 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:30 Download gff for
UFO07744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cdi-RA | 1092..2211 | 1..1121 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:30 Download gff for
UFO07744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19049818..19050072 | 794..1047 | 98 | <- | Minus |
| 3R | 19050146..19050231 | 708..793 | 100 | <- | Minus |
| 3R | 19050291..19050489 | 509..707 | 100 | <- | Minus |
| 3R | 19060713..19060834 | 387..508 | 100 | <- | Minus |
| 3R | 19087405..19087788 | 1..386 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:14:51 Download gff for
UFO07744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14875540..14875794 | 794..1047 | 98 | <- | Minus |
| arm_3R | 14875868..14875953 | 708..793 | 100 | <- | Minus |
| arm_3R | 14876013..14876211 | 509..707 | 100 | <- | Minus |
| arm_3R | 14886435..14886556 | 387..508 | 100 | <- | Minus |
| arm_3R | 14913127..14913510 | 1..386 | 98 | | Minus |
