UFO07745.5prime Sequence
1127 bp (1042 high quality bases) assembled on 2011-07-14
> UFO07745.5prime
CAGTCGACATGACCGAAGAGGACGATGATGTGGCCCAAAGGGTGGCGACG
GCGCCCGTCCGCAAGCCGGACGACGAGACGGCCTTCCTGGAGTACATCGA
AATGGAGAACTTCAAGTCCTACCGCGGTCACATAGTTGTGGGTCCTCTGA
AGCAATTCAACGCTGTTATTGGGCCCAACGGATCAGGCAAGTCAAACTTC
ATGGATGCCATCAGTTTCGTGATGGGCGAGAAGACCAGCAGTTTGCGAGT
AAAGCGCCTGAACGACCTCATCCATGGCTCCTCCATTGGCAAGCCCGTTT
CCCGCAGTTGCTACGTGACCGCCAAATTTGTGCTGAACGAGGAGCGCCAC
ATGGACTTCCAGAGGGCTGTTATCGGCGGCTCCTCGGAATATCGTATCAA
TGGAGAGAGCGTATCGAGCAGCACCTACTTGAACAAGCTGGAGAAAATTG
GCATCAATGTTAAGGCCAAGAACTTTTTAGTATTCCAGGGAGCTGTTGAG
AACATAGCCATGAAGACACCCAAGGAACGCACTGCTCTATTTGAGGAAAT
AAGCGGTTCTGGTCTGCTTAAGGACGACTATAATCGCCTTAAACAAGAAA
TGATTGTTGCCGAGGAGGAGACCCAGTTTACTTACCAAAAGAAGAAGGGC
ATCGCGGCGGAACGAAAAGAGGCCAAGCACGAGAAGATGGAAGCTGATCG
CTACACTCGCCTGCAAAACGAATACAATGAAAAACAAGTGGAGTATCAAT
TATTTAGGCTATTCCACGTGGAGAGGGACATCCGGAAGTTTACGAGCGAT
TTGGAGGTGAGGCAACAGGAAGTAAAAGCAGTCGAACAGCGGAAAGAGCT
GCCGATGAAATCTTGCGCGAAAGAAGAAGACGCCCGGAAAAATCACCCGA
GACCTGGCCAAATCGATCAGGAAATCAGAGAGTTTGAAACCCAGATGAAC
AAACGCGGCCCCTTTACATCAAGGCCAAAGAGAAAGTTACCCACTGCAGA
AGAAGCTTCATTTTCCCTACAGAAGACTCTGGAACAGCCAGGGAGGCGGA
CAATGCCCTTCAGTCGACATACCGGAAACTGGAAAACACTGGCTGGATGT
GGAGCCTGAAACCGTTCCAGACGATCG
UFO07745.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:22:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SMC1-RA | 3924 | CG6057-RA | 115..1224 | 9..1111 | 4935 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:22:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24058401..24058799 | 9..407 | 1965 | 99.5 | Plus |
| 3R | 32079331 | 3R | 24059284..24059633 | 721..1066 | 1200 | 94 | Plus |
| 3R | 32079331 | 3R | 24059061..24059230 | 556..725 | 775 | 97.1 | Plus |
| 3R | 32079331 | 3R | 24058853..24059003 | 406..556 | 725 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:22:01 has no hits.
UFO07745.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:19 Download gff for
UFO07745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMC1-RA | 93..1209 | 1..1111 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:14:54 Download gff for
UFO07745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMC1-RA | 108..1224 | 1..1111 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:32 Download gff for
UFO07745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMC1-RA | 108..1224 | 1..1111 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:32 Download gff for
UFO07745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24058394..24058799 | 1..407 | 98 | -> | Plus |
| 3R | 24058855..24059003 | 408..556 | 98 | -> | Plus |
| 3R | 24059062..24059230 | 557..725 | 97 | -> | Plus |
| 3R | 24059289..24059681 | 726..1111 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:14:54 Download gff for
UFO07745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19884116..19884521 | 1..407 | 98 | -> | Plus |
| arm_3R | 19884577..19884725 | 408..556 | 98 | -> | Plus |
| arm_3R | 19884784..19884952 | 557..725 | 97 | -> | Plus |
| arm_3R | 19885011..19885403 | 726..1111 | 94 | | Plus |
