UFO07747.5prime Sequence
1092 bp (1016 high quality bases) assembled on 2011-07-14
> UFO07747.5prime
CAGTCGACATGCCGCCACACATCCTTGGAAGCGCCAGCGGAAGCAGCTCG
ACAGCGGCCGCCTCTCCGCCCACCAGCAGCGCCAGCCAGACGCCTCCATC
GCCAGCCATCCACCACAGTCATCTTAGCCAGCACAACGCAACCAGCGCCA
TGTCCAAGCCGACGACGCCTCAGCGCCACGGCAACCCCAGCCTCCTTCCC
ACGCTCCAGTGGCCGTGGAACACCAGCCTGGGCAGCACCTCCACTGCCGT
GCCCGCCGCCTCGGCCAACAAAAACAAGCGGACGGCGGCCGGATCTGGGG
CGGCATTAGGATTGAGCGGTGAAGGGTCCTGTTTAACCGGTGGAGGAGCC
GCGTCGGCTAAGAAAGCGCGCAGCGATTTGCCCGGCTCCTTTGACGCAAG
CAAAAGACTGAAAGTGGCCGCTATGGAGGAGTCACAGACCAAGATTACCG
GTTTTTTTAAATCCCAAATGAAGCCGTCTCCTGGCGGCGGTAAGCTATCG
CCGCAGCCCGGCCAGCAAAGCAATCCGGCCAACACGCTGACCATGAGCAC
GCCCGCAACTACCGCCTCGCTGAACAAGTACTTCAATATCCTGTCGCAGC
TGAAAGAGCAGAAGGCCCAACAGCAACAACAGCAGCAGCAGGCATCCAAG
ACCTTGCCCACTCCAGCTCCAGTCGCCCCAGTCCCATCTGCGCCCCCTGT
CGCGCCCGTGGTCGTCACTCCCAGTCCCAGTTTGCCCGTCCCGGCGCTGA
AAAAGATCGAACGCAGCAACAAGCAGCCTGCCAAGATAGCGCAGGTGGCA
CCCAATCTGCGCAAGACGCCCAGCAGTGGATCTTCACGCAGCTCCTCGTC
GTCCTCGTCTAGCTCCTCAAATGGCTCGAATACGGGAAAATCGCCAACGA
AGAAACACGTGGCCATCGCACCCAGGACGCCGGAAATGAAAACAGCAGCA
GCAGCAGGGAAAGGCGGCCATGGTCTACCGACGGCCAGTAACAAGCCACC
GCTTTGAAGCAAAAGCAGATCTCACCACCCGGCCCCGGTGCGGTCAAACA
CCGGCCAGCGCAGCATAAATCAAGCCGGCCCCGCAATCCACG
UFO07747.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:24:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jing-RJ | 7491 | CG9397-RJ | 537..1602 | 9..1071 | 5040 | 98.5 | Plus |
| jing-RD | 4817 | CG9397-RD | 228..1293 | 9..1071 | 5040 | 98.5 | Plus |
| jing-RI | 6397 | CG9397-RI | 1808..2873 | 9..1071 | 5040 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:24:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6614229..6615261 | 9..1043 | 4985 | 99.2 | Plus |
Blast to na_te.dros performed 2014-11-27 00:24:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6688..6765 | 558..640 | 160 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6883 | 530..672 | 152 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..6786 | 596..640 | 144 | 80 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6807 | 596..640 | 144 | 80 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1093..1138 | 596..641 | 140 | 78.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2483 | 500..641 | 137 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6799..6840 | 596..640 | 137 | 82.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1103..1159 | 597..654 | 134 | 72.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2357 | 596..641 | 131 | 76.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6872..6958 | 597..687 | 131 | 64.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2362..2523 | 493..653 | 130 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2275..2402 | 513..641 | 129 | 61.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1590 | 597..649 | 127 | 73.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6875 | 597..691 | 127 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2354 | 597..641 | 126 | 75.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2623..2659 | 604..640 | 122 | 81.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2376..2419 | 597..640 | 121 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2378 | 597..641 | 117 | 73.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1162 | 540..641 | 117 | 61.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1145 | 607..691 | 115 | 60.9 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 982..1027 | 607..653 | 115 | 74.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6664..6744 | 561..640 | 113 | 64.6 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 5594..5669 | 574..642 | 110 | 68.4 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 7049..7124 | 574..642 | 110 | 68.4 | Plus |
UFO07747.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:36 Download gff for
UFO07747.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jing-RI | 1555..2597 | 9..1052 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:16:10 Download gff for
UFO07747.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jing-RI | 1808..2850 | 9..1052 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:21 Download gff for
UFO07747.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jing-RI | 1808..2850 | 9..1052 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:21 Download gff for
UFO07747.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6614229..6615249 | 9..1031 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:16:10 Download gff for
UFO07747.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2501734..2502754 | 9..1031 | 99 | == | Plus |
