UFO07748.5prime Sequence
1120 bp (1025 high quality bases) assembled on 2011-07-14
> UFO07748.5prime
CAGTCGACATGCAGAGATCCACAGACCGGTTGCGCCGGCTGAAAAAGCTG
AAGAGCGTTACGGGAGCGCAGGATGGCGTTGGTGGCGGCGATGCGGCGGC
GACGGCGGATAATCGGACCTCCGCATCGTCGGACACGAACGGAGCAGCCG
CCAGTAGCGGAGCCGGCGGCAATCAGCCAGGCACACTCAATCCGGAGGTC
TTCAAGCACTTGGACAAATCCGGACGCAGTGAATTCCTGAAGTACCTCAA
GCATCAGTTGCAGGATGCGGCGGATACGCCCGTTTACGACAAGAACGGCG
TCTTTAAGCAGGGCATCTCCAATGCCATATACCAGCTTCTTTGGCAGACT
CTGCGCTTCACTCACAAAAAAGACATAGTACTCCACCTGCTCCTGGAAGT
CGTGGCCCTCCATGCGGACTTTCCCAGCCTTATAGTGGACGTGGTTAACA
TTCTGGACAGCGAAACCTCCCTTATAACCGATGGACTTCAGGAAGAACGA
CATGCCTTTGTGCAACTTGTTAAAGACTTGGACAGGGTGATTCCAGAAAG
TCTTTTGAAAGAACGTTTGGAAATCGATACGTTGCAGGAGGCGGGAATCG
TCAAGAACAAGAGCTTTTACTCTAAGTTCATCAAGGTCAAAACCAAGCTA
TACTACAAGCAGCGTCGGTTTAACCTTTTCCGCGAGGAGAGTGAAGGGTT
TGCCAAGCTTATCACAGAGCTAAACCAGGAGTTCGACGAGAACACCACTC
CAGAGAGCATAATGGATATCATAAAATCCCTTATAGGCTGCTTCAATCTG
GATCCTAATCGTGTGCTGGACATTATTATCGAGTCCTTTGAAACTCGTCC
GGATCGATGGAACTTGTTCATACCCCTGCTGCGCAGCTACATGCCCACTG
GTGCCATTATTTGCGAAGTCCTCGGCTACAAGTTCTGCCACTTTAAAGGA
CTCCCGCACTCCCCGCTCGTTATATTCATGTATGTGCCTCTTTTGCTTAA
GCATGGCGTCATTGCCTCTGAACGATTTAATACGTGTGGTGACTCCAACG
AGTGGGAGCATAAGGCGGACTGGGAAGAAGACCTTGCCTGATGCCAGGGA
AATGTCGGCAAGCTGACCTT
UFO07748.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:24:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tho2-RC | 5401 | CG31671-RC | 157..1261 | 9..1116 | 5225 | 98.7 | Plus |
| tho2-RB | 5404 | CG31671-RB | 157..1261 | 9..1116 | 5225 | 98.7 | Plus |
| tho2-RA | 5401 | CG31671-RA | 157..1261 | 9..1116 | 5225 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:24:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2144115..2144367 | 656..404 | 1250 | 99.6 | Minus |
| 2L | 23513712 | 2L | 2144805..2145031 | 235..9 | 1135 | 100 | Minus |
| 2L | 23513712 | 2L | 2143536..2143851 | 1104..785 | 1105 | 95.3 | Minus |
| 2L | 23513712 | 2L | 2144456..2144625 | 405..236 | 850 | 100 | Minus |
| 2L | 23513712 | 2L | 2143919..2144053 | 787..653 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:24:09 has no hits.
UFO07748.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:37 Download gff for
UFO07748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tho2-RB | 140..1254 | 5..1120 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:16:12 Download gff for
UFO07748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tho2-RA | 152..1266 | 5..1120 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:22 Download gff for
UFO07748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tho2-RA | 152..1266 | 5..1120 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:22 Download gff for
UFO07748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2144457..2144625 | 236..404 | 100 | <- | Minus |
| 2L | 2144805..2145036 | 5..235 | 99 | | Minus |
| 2L | 2143518..2143849 | 787..1120 | 95 | <- | Minus |
| 2L | 2143920..2144053 | 653..786 | 100 | <- | Minus |
| 2L | 2144119..2144366 | 405..652 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:16:12 Download gff for
UFO07748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2144805..2145036 | 5..235 | 99 | | Minus |
| arm_2L | 2143518..2143849 | 787..1120 | 95 | <- | Minus |
| arm_2L | 2143920..2144053 | 653..786 | 100 | <- | Minus |
| arm_2L | 2144119..2144366 | 405..652 | 100 | <- | Minus |
| arm_2L | 2144457..2144625 | 236..404 | 100 | <- | Minus |
