UFO07749.5prime Sequence
1100 bp (1005 high quality bases) assembled on 2011-07-14
> UFO07749.5prime
CAGTCGACATGCTGAGCCGCAAGCGCCGGGCGAGCAGCATATCCAGCCGG
CAGGACGAGGATCCGCTGCAGCTGGACGACTCGACGCCGGAGCAGTCACC
GGTGCAGCAGACGACGACACAATCGGCGCGAAAAAAGCGCCGTCTCGATC
CCACAGAACTGTGCCAGCAATTGTACGATTCCATAAGGAACATAAAGAAG
GAGGACGGTTCAATGCTGTGCGACACCTTCATCCGCGTGCCGAAGCGCCG
GCAAGAGCCCTCGTACTATGACGTGGTGGTCAATCCCATTGATCTGCTCA
AGGTTCAGCAGAAGCTGAAAACCGATTCCTACGACGATTTGGATGATCTG
ATGGCCGACCTGGAGCTGCTTATTGGCAATGCCAAGGCCTTCTACATACC
GGGCAGTAGCGAGCACCAGGACGCAGTCTCTCTGTGGCAGCACATTCATT
CGCAGAGACAGCGCATTATGGAGGCAAATGGATTGGCGGAGGAGGAGCCG
CGTGCCAGACGCATGTCGCGCCAAGTGCGCCGAATGACCAGCAGCACTGA
ACCTGGTGGCGATGGAGCAACTGATGACGAGTACAACCAGTACGAGGAGC
TCTTCGCCTCCGTTATGACCGCTACCGATCCCGTGGGCGATCGGTTAATG
CACCGCATGTTCCAACTGCTGCCCTCCAAGAAAATCTATCCAGACTACTA
CGATGTCATTGAGCATCCCATTGATCTGCGCCTGATTGCGACCAAAATAC
AAATGAACGCTTACTCCTCGCTGGCGGAGATGGAACGGGATCTGCTACAA
ATGACCAAAAACGCATGTCTGTTCAACGAGCCTGGTTCTCAGATCTATAA
AGACGCCAAATCCCTGAAACGGATCTTTACGCAGCGGCGTATTGAGCTGG
AGATGGGCAAAGGCAAGCTGGCTAAGCGCGTCAAGAGTCTCCCCAGTGCA
GCAATTGCTGCACTAAAGAGGGAGTTGACAGCTCGGACGACGAGGAGACC
AGCAAAAGGCCGAGGGGCCCATGGTGGGCATTGTTTCGATTACCTTGTAC
ACCGCAACCAGGAACTTCCGAACATCCCGGGAAGTACTGGTCCTCAATTG
UFO07749.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:22:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| polybromo-RA | 5119 | CG11375-RA | 88..1176 | 9..1100 | 5130 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:22:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24804221..24805172 | 960..9 | 4730 | 99.8 | Minus |
| 3R | 32079331 | 3R | 24804026..24804157 | 1100..965 | 250 | 89.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:22:18 has no hits.
UFO07749.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:22 Download gff for
UFO07749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| polybromo-RA | 80..1172 | 1..1100 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:15:04 Download gff for
UFO07749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| polybromo-RA | 84..1176 | 1..1100 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:40 Download gff for
UFO07749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| polybromo-RA | 84..1176 | 1..1100 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:40 Download gff for
UFO07749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24804221..24805176 | 1..960 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:15:04 Download gff for
UFO07749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20629943..20630898 | 1..960 | 99 | | Minus |
