UFO07752.5prime Sequence
1110 bp (1020 high quality bases) assembled on 2011-07-14
> UFO07752.5prime
CAGTCGACATGAGCCAGCACACTTCGCAGTACGTTTTCAACTCCAAGGAA
GACTACAACGTAATCCTAGACAACATGAGTCGCGAGTTCGAAGAGCGGTG
GAATCACCAGACCCAGTCGCCCTACACCAATCTGGAAAACTATATAACCC
GGGCCGTCCTCGGCAACGGAAGTTTCGGCACTGTGATGCTGGTCAGGGAG
AAGAGTGGCAAGAACTACTATGCCGCCAAGATGATGAGCAAGGAGGATCT
GGTGCGGCTGAAGCAGGTGGCCCACGTACACAACGAGAAGCACGTCCTGA
ACGCCGCCCGATTCCCGTTCCTCATCTACCTGGTGGACTCGACCAAGTGC
TTCGACTATCTCTACCTAATCCTCCCGCTGGTCAATGGAGGAGAGCTGTT
CAGTTACCATCGCAGAGTTCGCAAGTTCAACGAGAAGCACGCCAGATTCT
ATGCCGCCCAGGTGGCACTTGCTCTTGAGTATATGCACAAGATGCACCTC
ATGTACCGTGATCTGAAGCCGGAGAACATTCTGCTCGATCAGCGCGGCTA
TATCAAAATAACGGACTTCGGTTTCACTAAGCGTGTGGATGGCCGCACAT
CAACGCTGTGTGGAACCCCGGAATACTTGGCCCCGGAGATTGTTCAACTC
CGGCCCTACAACAAATCGGTGGACTGGTGGGCCTTTGGTATCCTAGTGTA
CGAGTTTGTGGCAGGGCGGTCTCCCTTTGCCATTCACAATCGAGATGTAA
TCCTGATGTACTCCAAGATCTGCATATGCGACTACAAGATGCCCTCATAC
TTTACGTCCCAGCTGAGGAGCCTTGTCGAGAGCCTTATGCAGTGGACACC
TCAAGCGTTTAGGAACTCGAACGACGGCTCCAGCGACGTGAGAGTCATCC
GTGTTCCAGGGCGTAGATTGATTTGCATTCTCAACCAGGAGTCACCGCCC
CTACAGCCCACCATTTCCGGCGCGAGATCTGTCGACTTCGAGACTCGAGT
CAAGATCGGTACAGTCCGATACCGCCATCCGATTGTTGGCATTGGCAGCT
TCCGACATTCGTGCGCCGCAGGTAATGGCTATATCTATCTATTCTAGTCA
ATCACTAGCT
UFO07752.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:21:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pka-C2-RB | 1349 | CG12066-RB | 171..1191 | 9..1013 | 4675 | 98.2 | Plus |
| Pka-C2-RC | 1346 | CG12066-RC | 171..1188 | 9..1013 | 4620 | 97.9 | Plus |
| Pka-C1-RD | 4480 | CG4379-RD | 1735..1898 | 477..640 | 235 | 77 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:21:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30695931..30696206 | 854..580 | 1315 | 99.3 | Minus |
| 3R | 32079331 | 3R | 30696505..30696735 | 415..185 | 1155 | 100 | Minus |
| 3R | 32079331 | 3R | 30696792..30696968 | 185..9 | 885 | 100 | Minus |
| 3R | 32079331 | 3R | 30696259..30696426 | 581..414 | 840 | 100 | Minus |
| 3R | 32079331 | 3R | 30695742..30695857 | 973..864 | 270 | 92.2 | Minus |
| 2L | 23513712 | 2L | 9696932..9697095 | 640..477 | 235 | 76.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:21:36 has no hits.
UFO07752.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:15 Download gff for
UFO07752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-C2-RB | 171..1196 | 9..1017 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:14:39 Download gff for
UFO07752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-C2-RB | 171..1196 | 9..1017 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:19 Download gff for
UFO07752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-C2-RB | 171..1196 | 9..1017 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:19 Download gff for
UFO07752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30695927..30696204 | 582..857 | 98 | <- | Minus |
| 3R | 30696259..30696424 | 416..581 | 100 | <- | Minus |
| 3R | 30696505..30696734 | 186..415 | 100 | <- | Minus |
| 3R | 30696792..30696968 | 9..185 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:14:39 Download gff for
UFO07752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26522227..26522456 | 186..415 | 100 | <- | Minus |
| arm_3R | 26521649..26521926 | 582..857 | 98 | <- | Minus |
| arm_3R | 26521981..26522146 | 416..581 | 100 | <- | Minus |
| arm_3R | 26522514..26522690 | 9..185 | 100 | | Minus |
