UFO07753.5prime Sequence
1137 bp (1024 high quality bases) assembled on 2011-07-14
> UFO07753.5prime
CAGTCGACATGCAGTACTTAAACTTTCCGCGCATGCCAAACATTATGATG
TTCCTGGAGGTTGCGATCTTATGCCTGTGGGTGGTCGCAGACGCATCGGC
CAGTTCGGCCAAGTTCGGCAGCACAACGCCCGCAAGTGCGCAGCAGTCGG
ATGTGGAACTGGAGCCCATCAATGGGACTCTCAATTACCGACTGTACGCC
AAGAAGGGCAGGGACGACAAACCCTGGTTTGATGGCCTAGACAGCAGGCA
CATCCAGTGTGTCCGACGTGCCCGTTGCTACCCCACCTCGAACGCAACCA
ACACCTGTTTCGGCTCAAAATTGCCCTATGAGCTGAGCAGCCTAGATCTC
ACCGACTTCCACACCGAAAAGGAGCTGAACGATAAGCTGAACGACTACTA
TGCCCTGAAGCACGTGCCCAAATGTTGGGCAGCTATACAGCCCTTTTTGT
GCGCCGTCTTTAAGCCGAAGTGTGAAAAAATCAACGGCGAGGACATGGTC
TACCTGCCATCTTACGAGATGTGCCGAATTACCATGGAACCCTGTCGCAT
TTTGTACAACACGACGTTTTTCCCAAAATTCCTTCGCTGCAACGAAACAC
TCTTTCCGACGAAATGCACAAACGGAGCACGAGGAATGAAATTCAACGGA
ACTGGCCAGTGTTTAAGTCCTTTGGTTCCGACAGATACGTCAGCCAGCTA
TTATCCTGGCATCGAGGGCTGCGGCGTGCGATGCAAGGATCCACTCTATA
CCGATGATGAGCATCGGCAGATCCACAAACTGATCGGATGGGCTGGCAGC
ATATGTCTTCTGTCTAACCTTTTCGTGGTGTCCACCTTCTTCATCGACTG
GAAGAATGCCAACAAGTATCCGGCAGTAATTGTGTTCTACATAAATCTTT
GCTTTCTAATTGCTTGCGTCGGCTGGTTGCTTCAGTTTACTTCTGGCTCG
CGAGAGGACATAGTATGTCGTAAGGATGGAACACTTCGCCACTCAAAGCT
ACAGCCGGTGAAATCTTTCTTGCATATGATCTTTTGTGCCTGTCTATTAT
TTTTCTCACCGCTGAAATGGCTGTTTGGTTTCCCTCACCCTAGGCTGCCA
TGAAGGACAATGGTCACGTTCGAATCGGATAGATAAA
UFO07753.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:24:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| smo-RA | 4008 | CG11561-RA | 245..1377 | 9..1136 | 5150 | 97.5 | Plus |
| CG17078-RE | 3132 | CG17078-RE | 1..305 | 351..47 | 1525 | 100 | Minus |
| CG17078-RE | 3132 | CG17078-RE | 371..409 | 47..9 | 195 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:24:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 278641..279124 | 439..922 | 2420 | 100 | Plus |
| 2L | 23513712 | 2L | 277930..278323 | 47..440 | 1970 | 100 | Plus |
| 2L | 23513712 | 2L | 279184..279333 | 922..1070 | 455 | 91.4 | Plus |
| 2L | 23513712 | 2L | 277826..277864 | 9..47 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:24:24 has no hits.
UFO07753.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:39 Download gff for
UFO07753.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| smo-RA | 233..1309 | 1..1081 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:16:20 Download gff for
UFO07753.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| smo-RA | 239..1315 | 1..1081 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:30 Download gff for
UFO07753.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| smo-RA | 239..1315 | 1..1081 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:30 Download gff for
UFO07753.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 277820..277863 | 1..46 | 91 | -> | Plus |
| 2L | 277930..278323 | 47..440 | 100 | -> | Plus |
| 2L | 278643..279124 | 441..922 | 100 | -> | Plus |
| 2L | 279185..279341 | 923..1081 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:16:20 Download gff for
UFO07753.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 277820..277863 | 1..46 | 91 | -> | Plus |
| arm_2L | 277930..278323 | 47..440 | 100 | -> | Plus |
| arm_2L | 278643..279124 | 441..922 | 100 | -> | Plus |
| arm_2L | 279185..279341 | 923..1081 | 92 | | Plus |
