UFO07754.5prime Sequence
1116 bp (1023 high quality bases) assembled on 2011-07-14
> UFO07754.5prime
CAGTCGACATGGATACATTTTCCGCTGCGGTTTTCCCCCGGCAGCCGGTG
GCTTTCGTCCTGGTCCTGGCCACAGCTCTTTCCCTGGTCCAAGGTGAACA
GCACCCCGCCACTGCAGACGAAGGACCCCTATCCGAGATTCTCACTGCCG
TTGGTTCCGAGGTGGCGCTCCCATGCGATCTGGTGCCCGGAACTGGGATC
GTCGACAAGGTGCAGCTGGTCATCTGGTATCGCCAGGGAAACGTGAAGCC
CATCTATACCTTTGATGCGCGAGGTCGTCCATTGAATCTGGGCATTCCCT
GGGCAGATGAAAGTGTGTTCAACAAGAAGGCCCACTTCCACCACGACACA
GATCCTCCTGCCCTGCGGATCAAGAACATTCAAACCTCCGATGCCGGACT
CTACAAGTGCCGAGTGGACTTCCACAAGTCACCAACTCGCAACTGGCGCA
TCAATGTAACAGTGCTAGTTCCACCCACTGCGCTGACCATCCTGGATCAC
CATGGGGCCGAGATCCGGGACCAGACGGCAGGACCGTACCTGGAAGGCGA
CAGCATCGACCTCACCTGCCTCTCGAGCGGCGGAGTTCCTCCTCCGCGGG
TCTCCTGGTGGCGGGAGCACGCCCTGATCGACGACTCCTTTCAGGTGCTG
CCCGACGGCTCCGTGCGGAATGTCCTGCGCCTCAAGAACATTCAGCGGAA
GGATCTCCTCACGATGTACACCTGCCAGGCGAGCAATGGCCACGTGGTTC
CAGCGCTGACCAAGAAGGTTATCCTCGACATGAATCTTCCCCCACTTAGT
TTGCTTTTGCAAGGCCTTAACCATGCCGTAATTGCTGGAACCCGATCCCA
CGTTACTTGCACGGCCATTGGCGCTCGTCCTCCGCCGGAAATAATCTGGT
CTAAGCGGGACAGATTGTGCGGGGAGCCACCTCCTCGACGTCGTCGATGG
GACACACCATATCGGACTGATGCTGATTCCCGGTCCCGAGATATGAACGC
AGGTGGTTCTGTTCCATTCGCTGATGCGGGATTACCTCCCCAGCAGCTCC
TGGAGGCCCACCCCTGTGATGACCTACTCTGGCATGGACACCCGGAACTC
TATCTGAGGATTCCAG
UFO07754.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:24:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34371-RB | 5760 | CG34371-RB | 823..1943 | 9..1116 | 5025 | 97.7 | Plus |
| CG34371-RA | 5760 | CG34371-RA | 823..1943 | 9..1116 | 5025 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:24:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23172487..23172733 | 713..467 | 1235 | 100 | Minus |
| 2R | 25286936 | 2R | 23172797..23173005 | 468..260 | 1045 | 100 | Minus |
| 2R | 25286936 | 2R | 23169714..23169865 | 937..787 | 710 | 99.3 | Minus |
| 2R | 25286936 | 2R | 23176151..23176288 | 259..122 | 690 | 100 | Minus |
| 2R | 25286936 | 2R | 23191124..23191239 | 124..9 | 580 | 100 | Minus |
| 2R | 25286936 | 2R | 23170584..23170657 | 786..713 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:24:28 has no hits.
UFO07754.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:40 Download gff for
UFO07754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34371-RA | 813..1882 | 1..1061 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:16:26 Download gff for
UFO07754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34371-RA | 815..1884 | 1..1061 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:32 Download gff for
UFO07754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34371-RA | 815..1884 | 1..1061 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:32 Download gff for
UFO07754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23172487..23172731 | 469..713 | 100 | <- | Minus |
| 2R | 23172797..23173005 | 260..468 | 100 | <- | Minus |
| 2R | 23176151..23176286 | 124..259 | 100 | <- | Minus |
| 2R | 23191125..23191246 | 1..123 | 96 | | Minus |
| 2R | 23169714..23169865 | 787..937 | 99 | <- | Minus |
| 2R | 23170584..23170656 | 714..786 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:16:26 Download gff for
UFO07754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19057237..19057388 | 787..937 | 99 | <- | Minus |
| arm_2R | 19058107..19058179 | 714..786 | 100 | <- | Minus |
| arm_2R | 19060010..19060254 | 469..713 | 100 | <- | Minus |
| arm_2R | 19060320..19060528 | 260..468 | 100 | <- | Minus |
| arm_2R | 19063674..19063809 | 124..259 | 100 | <- | Minus |
| arm_2R | 19078648..19078769 | 1..123 | 96 | | Minus |
