UFO07757.5prime Sequence
1129 bp (1014 high quality bases) assembled on 2011-07-14
> UFO07757.5prime
CAGTCGACATGCGAGTCCGAGCCACAGATCCGCGTCCCTGCCCCAAGTGC
GGAAAAATCTACCGCTCCGCCCACACGCTACGCACCCATCTGGAGGACAA
GCACACCGTGTGCCCCGGCTATCGATGTGTGCTCTGCGGCACGGTGGCCA
AGTCCCGCAACTCTTTGCACTCGCATATGTCGCGCCAACATCGCGGCATC
TCCACCAAGGACCTGCCCGTCCTGCCCATGCCCAGTGCTTTCGATCCAGA
GCTCGCCTCGCGCCTTCTGGCCAAGGCGGGCGTCAAGATCTCACCCGCTG
AGCTGAGGGCCAGAGCCTCGCCCACCGGCGGAAGTGGCAGCAGCGGCGGA
GGCGGCGGAGGTGGTAGCAGCCAGGCCAAGTTGGATTTAAGCAACGCTAG
CGGTGGACCCATGGACGATGCCGAGGACTCGGACGACGATCCCGAGGACC
TGACCACGGGCAACGGATTGTATGGAATGGGCGGAAGCAGCAGCGACCTG
AGCCGTTACCACGAGAGCCTGTTGAGCAACTTCGGTCACGCCAGGATGCG
AAATGAGGCGGCTGCCGTGGCGGCCACTGCAGCTGCTCTTGGTCAACCCA
AGGACTTGGGCGTTCAGCTGCCAAACAGCAACGCGCCTGGGCAATCCCTG
CTGGACACCTATCTGCAGTTCATCACGGAGAATACATTCGGCATGGGCAT
GTCCCAGGAGCAGGCCGCTGCAGCAGCACTGCGCGCCAAGATGGCCCAGC
TTAACGCGATGGGACACAGTCTGGACAACCTGCCGCCGGGCCTTCTTCCC
GGACAATTCGACCTGAGCAAGCTGGCCGCCGGAATCCCGCCTTTGGACAG
AGCGGACCCGGACTAACCATTGAGCCGATAATGCGACACGAACAGGCAGC
GGGAAACCTCTCGCCGACCGACCACTGGCTCTCACTCGGCGGCAGATGAT
GGGTCACGATGAATGGCGGAAAATGATGGCGACATGCGCGGGAAGTTCGG
AACCCATGGATTTGGGCTGACAACACCAGTCGGGCAGCAACCATGAGGGT
GCACTCGATGGCCGAGGAGAACTACTCGGAGGATGAGGGAGTGCACACCA
GCAAGCTTCTAGAACATTCGTTGGCCCGC
UFO07757.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:24:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ab-RF | 4490 | CG43860-RF | 1983..3084 | 9..1097 | 5105 | 98.4 | Plus |
| ab-RD | 4888 | CG43860-RD | 2381..3482 | 9..1097 | 5105 | 98.4 | Plus |
| ab-RA | 5164 | CG43860-RA | 2385..3486 | 9..1097 | 5105 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:24:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11258235..11258917 | 9..691 | 3415 | 100 | Plus |
| 2L | 23513712 | 2L | 11258982..11259402 | 690..1097 | 1405 | 95 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:24:38 has no hits.
UFO07757.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:41 Download gff for
UFO07757.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ab-RC | 203..1317 | 1..1103 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:16:32 Download gff for
UFO07757.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ab-RA | 2377..3491 | 1..1103 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:36 Download gff for
UFO07757.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ab-RA | 2377..3491 | 1..1103 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:36 Download gff for
UFO07757.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11258227..11258916 | 1..690 | 99 | -> | Plus |
| 2L | 11258983..11259407 | 691..1103 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:16:32 Download gff for
UFO07757.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11258227..11258916 | 1..690 | 99 | -> | Plus |
| arm_2L | 11258983..11259407 | 691..1103 | 95 | | Plus |
