UFO07760.5prime Sequence
1150 bp (1050 high quality bases) assembled on 2011-07-14
> UFO07760.5prime
CAGTCGACATGAAATTAGTAAGATTCCTTATGAAGCTAAGTCACGAGACC
GTGACCATCGAACTGAAGAACGGCACCCAGATCCACGGCACCATTACCGG
CGTGGATGTGGCCATGAACACTCACCTGAAGAGCGTTCGGATGACGATCA
AGAACCGGGATCCCGTCCACCTGGAGACGCTGAGCATTCGCGGCAACAAC
ATCAGATACTTTATACTGCCGGACAGCCTGCCGCTGGAGACGCTCCTCAT
CGACGACACCCCGAAGTCGAAGACAAAAAAGAAGGACAGCGGCCGCGTGG
GAAATCGCGGCAGGGGCAGAGGCGCCCGCGGACGAGGTGGTCCACGGGGT
CGCGGAAGGGGCCGAGCTTCAGGCCGACGTGCAAGCTTTCTAGACCATTC
GTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATA
ATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGA
TTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATC
CAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCG
AGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTG
TAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGAT
GAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATAT
TTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTT
TAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACA
TATTCTCAATAAACCCTTTAGGAAATAGGCCAGGTTTTCACCGTAACACG
CCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGTATT
CACCTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTA
ACAAGGGTGAACACTATCCCATATTCACAGCTCCACCGTTCTTTCATTGC
CATACGAATCGGATGGACATCATCAGGCGGGCAGGATGTGATTACGCGAT
AACTGGGCTTATTTCCTTACGTCTTTAAGGCCGTAATATCACGCGTGAGC
UFO07760.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:22:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SmD1-RA | 729 | CG10753-RA | 94..467 | 7..380 | 1870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:22:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12733626..12733985 | 380..21 | 1800 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:22:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 220..299 | 937..1015 | 127 | 63.7 | Plus |
UFO07760.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:21 Download gff for
UFO07760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SmD1-RA | 91..477 | 7..395 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:15:01 Download gff for
UFO07760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SmD1-RA | 94..480 | 7..395 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:38 Download gff for
UFO07760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SmD1-RA | 94..480 | 7..395 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:38 Download gff for
UFO07760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12733626..12733983 | 23..380 | 100 | <- | Minus |
| 3L | 12734503..12734518 | 7..22 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:15:01 Download gff for
UFO07760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12726726..12727083 | 23..380 | 100 | <- | Minus |
| arm_3L | 12727603..12727618 | 7..22 | 100 | | Minus |
