UFO07762.5prime Sequence
1121 bp (1005 high quality bases) assembled on 2011-07-14
> UFO07762.5prime
CAGTCGACATGGTACACGGACCGCCGGCTCGCAGAAAATCACAGCAGCAG
CATGAGGCCTGCGAGATGGACATGGAGCGGCAGCCCACACCGCCAGACGG
CGGATGGGGATGGGTGGTGGTCTTCGGCTCCTTCATGATACACATAGTTA
CCGATGGCATGACCTACTCCTTTGGCATCTTCTACAATGAGTTCCTGGAC
TATTTCAACGAGGGCAAAGGCTACACGGCTTGGATTGCCTCCATAATGGT
GGGCGTGACCTTCTCATCCGGACCGATCAGCTCGTCGTTCGTAAATCGAT
ATGGCTGTCGTGCGGTGACCATAGCGGGCTCCATTTTGGCCGCCAGCTGC
ATCATCGTGAGCATGTTCGCCCAGAATGTCCTCACGCTGATCATTACGAT
CGGTTTCGGAACGGGCTTGGGCTTTGGTCTCATCTACCTGCCGGCCATTG
TGAGTGTGACGCAGTATTTCGAAGCCAAGAGATCTCTGGCCACGGGAATC
GCCGTCTGCGGCTCCGGATTCGGTACGTTTGTCTTTGCCCCGCTCACGGA
GTTCCTGATCGGCAACTACGGGTGGCGCGGTGCGATGCTAATTATCGGCG
GCATCGTGCTCAACTGCATCATCTTTGGGGCCATGTTCCGACCGCTGGAG
CTAGAGGCACCGCCGCAGACGCCGCCGAACACGCCGAGCACTCCCAAGCT
GGCCAAGAAGTCGGCCATTATCGATCAGAACACCACCGCGGCGGAGCTGG
AGCCCCTCAAGGTCCTGCCTAAGGATCAGTACCTGCAGCTGCCGCAGCGC
ACGGATACAGCGGTCTCGGGGGGTGCCCTATGCCGGTCCAACAGCGTTGG
CCACAACCTCAAGCCCAATCTGACAACAACTCGAACGGCGCCGTCAATGG
ACAGGGACCCACCTTGGTGACCCACCGCAGGCGGTGGTGAGAGCACAGCA
ACGATGACATCGCCCGCAAATGCAACAGCCAGTTGCAGCTGACTCCTTCT
CAGGGAATGCGCATCGCAGAGCGGAAATGCAAGTGTTACCATGTACCGAC
CGGATGCTCTCTTACCAGGCTCCCTCCAAACTACCGAACTATGTGAACTC
CAGGAACGAAACTTGACCGTT
UFO07762.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:25:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mct1-RB | 2738 | CG3456-RB | 411..1515 | 7..1109 | 5115 | 98.1 | Plus |
| Mct1-RA | 2955 | CG3456-RA | 628..1732 | 7..1109 | 5115 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:24:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2200004..2200606 | 270..872 | 2985 | 99.7 | Plus |
| X | 23542271 | X | 2198800..2198943 | 7..150 | 720 | 100 | Plus |
| X | 23542271 | X | 2199820..2199940 | 151..271 | 605 | 100 | Plus |
| X | 23542271 | X | 2200676..2200864 | 873..1062 | 555 | 94.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:25:01 has no hits.
UFO07762.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:44 Download gff for
UFO07762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mct1-RA | 621..1741 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:16:43 Download gff for
UFO07762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mct1-RA | 623..1743 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:43 Download gff for
UFO07762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mct1-RA | 623..1743 | 1..1121 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:43 Download gff for
UFO07762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2198795..2198943 | 1..150 | 98 | -> | Plus |
| X | 2199820..2199939 | 151..270 | 100 | -> | Plus |
| X | 2200675..2200869 | 873..1067 | 93 | -> | Plus |
| X | 2200005..2200606 | 271..872 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:16:43 Download gff for
UFO07762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2092828..2092976 | 1..150 | 98 | -> | Plus |
| arm_X | 2093853..2093972 | 151..270 | 100 | -> | Plus |
| arm_X | 2094038..2094639 | 271..872 | 99 | -> | Plus |
| arm_X | 2094708..2094902 | 873..1067 | 93 | -> | Plus |
