UFO07766.5prime Sequence
942 bp (930 high quality bases) assembled on 2011-07-14
> UFO07766.5prime
CAGTCGACATGCATAGAGCCCACACAGCCTTCAGCCTGGCCTTGTCGCCG
ATGGCGCACAAGAACTTCGCCACATGGCTGCTCAAGAGCAGCAGCAGTCA
GCAGATGGCCAAGGTAACTGCAGCGGCCGCTGTGCGCACCTACAACTCCG
CAGCTGCCGAACCTTTTGCCAACGGCAGCACCGCCTCCTACGTGGAGGAG
ATGTACAACGCCTGGCTTCGGGATCCCACTTCCGTGCACACCTCCTGGGA
CGCGTACTTCCGCAGCAACAGCTACGTTAGCCCGCCCAACTTGGCGCCCG
TGCAGGCCAACACTCTGCCGCTGACCGCCTTCAACTTTGGAGGAGCCGTC
GCCGGCGCTGCGCCCGACTCCAAGACCATTGACGACCATCTGGCCGTCCA
GGCCATCATCAGGAGCTACCAGTCACGAGGTCATTTGGCATCTGATCTGG
ATCCGCTTGGAATTTTGACTCGCGAAAAAACCGTCTGCAAGGATGGGCTA
GCACGTCGTGCTAACGAAGATGTGCTCAGGCAGCACTCTGGGTTTTTGTT
TGGCGAGCAGGACATGGATCGCCAGTTCAAGCTGCCCAGCACTACCTTCA
TCGGAGGCGATGAGGCTTCGTTGCCCCTAAAGGAAATCCTGAACCGCCTG
GAGAATGTCTACTGTAATAAGATTGGCGTGGAGTTCATGTTCATCAACTC
TCTGGAGCAATGCAACTGGATCCGCAAGCGTTTTGAGACCCCCGGCGTCC
TTAACTTCTCGCCCGAGGAGAAGCGTCTGATCCTGGCCCGTTTGACCCGT
GCACCGGCTTTGAGGCTTTCCTGGCCAAGAAGTACTCTTCTGAGAAACGT
TTCGGTCTGGAGGGTTGCGAGATCTTGATCCCAGCCCTGAAGGAGATCAT
CCACGTATCAACCGATTGGGAGTGGAGTCGACCATCTAGGTC
UFO07766.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:25:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nc73EF-RF | 3718 | CG11661-RF | 66..989 | 9..930 | 4525 | 99.5 | Plus |
| Nc73EF-RH | 3742 | CG11661-RH | 90..1013 | 9..930 | 4525 | 99.5 | Plus |
| Nc73EF-RJ | 4376 | CG11661-RJ | 460..873 | 9..422 | 2070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:25:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16962476..16962776 | 632..930 | 1360 | 98.3 | Plus |
| 3L | 28110227 | 3L | 16959705..16959884 | 243..422 | 900 | 100 | Plus |
| 3L | 28110227 | 3L | 16959281..16959422 | 101..242 | 710 | 100 | Plus |
| 3L | 28110227 | 3L | 16960536..16960668 | 421..553 | 665 | 100 | Plus |
| 3L | 28110227 | 3L | 16959121..16959216 | 9..104 | 480 | 100 | Plus |
| 3L | 28110227 | 3L | 16962334..16962414 | 552..632 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:25:19 has no hits.
UFO07766.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:48 Download gff for
UFO07766.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nc73EF-RF | 61..996 | 9..942 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:16:57 Download gff for
UFO07766.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nc73EF-RH | 87..1022 | 9..942 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:51 Download gff for
UFO07766.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nc73EF-RH | 90..1025 | 9..942 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:51 Download gff for
UFO07766.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16959705..16959884 | 243..422 | 100 | -> | Plus |
| 3L | 16960538..16960667 | 423..552 | 100 | -> | Plus |
| 3L | 16962335..16962413 | 553..631 | 100 | -> | Plus |
| 3L | 16962476..16962788 | 632..942 | 96 | | Plus |
| 3L | 16959121..16959216 | 9..104 | 100 | -> | Plus |
| 3L | 16959285..16959422 | 105..242 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:16:57 Download gff for
UFO07766.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16955576..16955888 | 632..942 | 96 | | Plus |
| arm_3L | 16952221..16952316 | 9..104 | 100 | -> | Plus |
| arm_3L | 16952385..16952522 | 105..242 | 100 | -> | Plus |
| arm_3L | 16952805..16952984 | 243..422 | 100 | -> | Plus |
| arm_3L | 16953638..16953767 | 423..552 | 100 | -> | Plus |
| arm_3L | 16955435..16955513 | 553..631 | 100 | -> | Plus |
