UFO07767.5prime Sequence
1120 bp (999 high quality bases) assembled on 2011-07-14
> UFO07767.5prime
CAGTCGACATGGCGGCCTACTTGAACCGCACCATCTCGATGGTGACCGGG
CAAACGGGCCCCGCCGACGACGACCGTCACGCCTCCTCCACGGACACGGT
GGACAAATCCGGACCCGGTTCCCCGCTATCCCGGTTCAACTCATCGCTGC
AACAATCCGGCTCCACAATGGCCGCCAATCTGCTACCGGAATCGCGGCTC
TATCAATCCAACGACAAATCACCGCTCCAGATCTTTGTGCGCGCCAAAAA
GAAGATCAACGATATCTACGGCGAGATCGAGGAGTATGTCCATGAGACGA
CCACCTTTATCAACGCCCTGCACGCGGAAGCGGAGATCGTGGACAAGGCG
GAACGGGAGCTGTTCGAAAGCTATGTGTACAAGGTGGCGGCCATTCGCGA
AGTACTGCAGCGGGATCACATGAAGGTGGCCTTCTTTGGACGCACCTCCA
ACGGCAAGAGCTCGGTGATTAATGCCATGTTGCGCGAGAAGATCCTGCCC
AGCGGCATTGGGCACACCACGAATTGCTTCTGCCAAGTGGAGGGCAGCAA
TGGCGGCGAGGCGTATCTTATGACAGAGGGCTCCGAGGAGAAGCTAAATG
TGGTGAACATCAAACAACTGGCGAATGCCTTGTGCCAGGAGAAGCTCTGC
GAGAGCAGTTTGGTGCGCATCTTTTGGCCGAGGGAACGCTGCAGCCTGCT
GCGCGACGATGTCGTCTTTGTGGACTCACCTGGTGTGGATGTGTCGGCCA
ATTTGGACGACTGGATCGATAACCATTGCCTGAACGCCGATGTCTTTGTG
CTGGTCCTGAATGCCGAGTCAACGATGACACGTGCGGAGAAGCAGTTCTT
TCACACCGTCTCGCAGAAGCTAAGCAAGCCGAACATCTTCATCCTGAACA
ATCGCTGGGATGCGTCGGCCAACGAGCCCGAGTGCCAGGAATCGGTTAAG
TCTCAGCACACGGAACGCTGCATCGACTTTCTTCACAAGGAGCTAAAGGT
GGGCAACGAAGAGGAGGCGGCGAAAGGTATTCTTCGTTTCCGCCAGGGAA
ACGCTGCAAGGCCGCAATCGAGGAAGGCCAAGGACCAATCCGCCGCACAT
GGGTTGCAATGCCTAGGCTC
UFO07767.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:25:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Marf-RC | 3605 | CG3869-RC | 505..1616 | 5..1117 | 5195 | 98.2 | Plus |
| Marf-RB | 3444 | CG3869-RB | 344..1455 | 5..1117 | 5195 | 98.2 | Plus |
| Marf-RD | 3617 | CG3869-RD | 505..1628 | 5..1117 | 5065 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:25:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6367718..6368059 | 605..946 | 1695 | 99.7 | Plus |
| X | 23542271 | X | 6366853..6367163 | 5..315 | 1540 | 99.7 | Plus |
| X | 23542271 | X | 6367358..6367648 | 315..605 | 1455 | 100 | Plus |
| X | 23542271 | X | 6368525..6368697 | 944..1117 | 410 | 87.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:25:23 has no hits.
UFO07767.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:48 Download gff for
UFO07767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Marf-RC | 503..1616 | 1..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:16:59 Download gff for
UFO07767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Marf-RB | 342..1455 | 1..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:53 Download gff for
UFO07767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Marf-RB | 342..1455 | 1..1117 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:53 Download gff for
UFO07767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6367359..6367648 | 316..605 | 100 | -> | Plus |
| X | 6366851..6367163 | 1..315 | 98 | -> | Plus |
| X | 6367719..6368057 | 606..944 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:16:59 Download gff for
UFO07767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6260884..6261196 | 1..315 | 98 | -> | Plus |
| arm_X | 6261392..6261681 | 316..605 | 100 | -> | Plus |
| arm_X | 6261752..6262090 | 606..944 | 99 | -> | Plus |
