UFO07768.5prime Sequence
1101 bp (1005 high quality bases) assembled on 2011-07-14
> UFO07768.5prime
CAGTCGACATGAGGGTCTCTTTGGCACTGTGGGGCACTTTGTGCCTGTGG
GTGGTCACCGCGAATGCACAAGGATTTATACCACCACCCAATGTCGGCCT
TCACAATGGGCCGCCCTTTCACAACTCGCAGCGCCGTCAGCTAAATCTGC
AGCAGTACAATCAGCAAAACTTTGTCCAGGCGGGCGTGGAGCTGCCCATT
CCCCACCGCTCCCAACATGGCCCCCATCCGCAGCACACGCATCTGCATCA
CCAGCAGCAGCCGCAGCAGCAGCACCGCTTCGGGCAGTTCCCACAGCAGC
AGCAGCAGCAGCATCAGCAGCCCCACAGCAATCAGCAGTTCCAACGTTCG
ACCCAAAATCAACTTCAAACCGCTCCACAGTTCCCGCAGCAGCAGCAGCA
GTTGCCCTCTCCTGCCGCCGGTTTGGATCTGCATCATCAAAACTTCTTGG
ACTTGCGCAACTTTGCTGGCTCCCAGCAGCAGCAGCCAAATCAGCAACAA
CATCAGCAGCGCCATAAGCAATTTGATTCCCGCTTGCAGTCCACTGCCTT
CCCGCCACAACCATCTCCGGAAACTTACCAGCAACAGCAATTGCAGCAAC
AGCAACAGCAGCAGTTTGCCTACCAGCAGCCCCAGCAGTTTGGACCACAG
GTTCTGCCCCAGACCACACAGAAGCTGCCCAGCCAGGCACCCGTGCCCAC
TTTCCAGACGATTCCCCAGCAGCAGAGCCAGTTTAACTACCAGCCACAGT
CCAGTCAGCAGCAGCAGTATCAGCTGACTCCCCAATTGGGATTGCCAGTG
CCGCAGATATTTAGCAATGTTCACGCCACACCCTTCCCGGAGCCAACCAG
AGGAAGCTTCCAGCAACAGCAGCAGCCAGTGCAGCAGCCTCAGTTCCAGC
ATCAATTTGTTAATGCTCCATCGCATTCAGCCACAGGCCCACAGCTGACA
GGATACAGCAAAGCTAATCCAGAGCACGAGCATTTGTGGCCAGCAGTACG
AAAAGTCGCAGCACAAGGTGCGTCAGCAGCACGAAGAATTCTTCTGAGCA
GCACAATCAGGCAGCAATCTGGCGAACATTGTGAACGAACAATGCACATA
C
UFO07768.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:25:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43333-RA | 4314 | CG43333-RA | 379..1479 | 8..1091 | 5020 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:25:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14166577..14167104 | 1041..525 | 2155 | 97 | Minus |
| 2L | 23513712 | 2L | 14167168..14167583 | 525..110 | 2080 | 100 | Minus |
| 2L | 23513712 | 2L | 14180206..14180308 | 110..8 | 515 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:25:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6677..7016 | 159..507 | 310 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2242..2645 | 133..521 | 286 | 56.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2662 | 284..637 | 280 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2379..2922 | 225..774 | 247 | 55.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2382..2974 | 474..1069 | 225 | 54.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6952 | 250..494 | 224 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2659 | 252..613 | 220 | 56 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2352..2945 | 474..1099 | 220 | 54.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6945 | 474..658 | 214 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6914 | 475..678 | 206 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..7200 | 474..892 | 205 | 56.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2537 | 296..521 | 188 | 58.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2601..2980 | 231..613 | 188 | 54.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..7034 | 288..630 | 183 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2590..2966 | 253..638 | 163 | 55.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2513 | 485..685 | 159 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6895 | 861..1038 | 153 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6803..6944 | 474..612 | 144 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6954 | 834..1062 | 143 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..6892 | 474..521 | 141 | 77.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2724..2973 | 259..522 | 139 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1524..1571 | 474..521 | 132 | 75 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1102 | 478..521 | 130 | 77.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2541 | 861..1068 | 126 | 60.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1119 | 844..904 | 122 | 68.9 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 978..1011 | 474..507 | 116 | 82.4 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7955..7995 | 480..520 | 115 | 75.6 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9399..9439 | 480..520 | 115 | 75.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2383 | 861..904 | 112 | 72.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6834 | 861..904 | 112 | 72.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1097..1140 | 861..904 | 112 | 72.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1110..1153 | 862..905 | 112 | 72.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2461 | 863..1031 | 111 | 58.2 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 5630..5682 | 475..523 | 111 | 73.6 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 7085..7137 | 475..523 | 111 | 73.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1493..1547 | 468..521 | 110 | 69.1 | Plus |
| TART-A | 13424 | TART-A 13424bp | 112..151 | 470..509 | 110 | 75 | Plus |
| TART-A | 13424 | TART-A 13424bp | 11290..11329 | 470..509 | 110 | 75 | Plus |
UFO07768.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:49 Download gff for
UFO07768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32972-RA | 365..1447 | 1..1066 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:17:00 Download gff for
UFO07768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43333-RA | 370..1452 | 1..1066 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:56 Download gff for
UFO07768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43333-RA | 370..1452 | 1..1066 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:56 Download gff for
UFO07768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14166551..14167103 | 526..1063 | 96 | <- | Minus |
| 2L | 14167168..14167582 | 111..525 | 100 | <- | Minus |
| 2L | 14180206..14180315 | 1..110 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:17:00 Download gff for
UFO07768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14180206..14180315 | 1..110 | 96 | | Minus |
| arm_2L | 14166551..14167103 | 526..1063 | 96 | <- | Minus |
| arm_2L | 14167168..14167582 | 111..525 | 100 | <- | Minus |
