UFO07771.5prime Sequence
871 bp (871 high quality bases) assembled on 2011-07-14
> UFO07771.5prime
CAGTCGACATGGCCGAAGCCCATGCCGCCGTGGCATTCTCGTTTGCCATC
ACCCATGAGGGCTTCGACATCAACTATGACCACGAGGTGCTCAATTTGGT
GTGGAACTCAGGAGTTCGTTCCTGGAAAAAGCGATTGGCTCGCGCAAGGA
ACGGCGTACGCAATGGCGTCTATCCGGCTCACATCCAGAGCCTCTGGTTG
ATCTCAGCAATAGCGCTGGGTCTACACTTTGCGGGCTACCAGGCTCCATT
CAATCTGACCAACCGTATACTGGTGCACCTGCCTTCCAACACGATAAACT
GGCAGGTTACCGCCTGCTTTTTGGCCGCTCTGGTGGTCTGGCTATCGATC
TGTTTCACCATGAGATACACTCTCAAGCTGCTGCTCATGTACAAGGGCTG
GATGTACGAGTCCAGAGCTCCCGGTAGTCGTGTCTCTCTGCCCACCATGT
TGTGGGTGGCAGTGGTGCGGGTTCTATCTAGTTGGAACAAACCGGGTCTG
TACAGCTTCCAGGGTTCTCTGCCCAGGCTGCCACTGCCCTCCGTTAAAGA
CACGATGACCAGGTACTTGCGCAGTGTTCGACCGCTGCTTGATGATGAGA
ACTACACGCGCATGGAGCGCCTGGCCAAAGAATTCGAACAGACCATCGGC
AAGAAGCTGCAGTGGTACCTCATCCTCAAGAGCTGGTGGTCCACCAACTA
CGTGTCGGATTGGTGGGAGGAGTACGTCTACCTTCGTGGTCGCAGTCCCC
TCTGCGTGAACAGCAGCTTCTACGGGCTCGGATGCGATCTTCATGAACCT
CACCGACAAACAGGCGGCGCGTGCGGCCAATGGGATTTCCCTGCTTCTCA
ACTTTCCGTCGACTTATCGAG
UFO07771.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:24:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| whd-RC | 2888 | CG12891-RC | 250..1110 | 9..871 | 4220 | 99.4 | Plus |
| whd-RA | 2882 | CG12891-RA | 250..1110 | 9..871 | 4220 | 99.4 | Plus |
| whd-RD | 2907 | CG12891-RD | 269..1129 | 9..871 | 4220 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:24:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10472493..10473213 | 871..149 | 3470 | 99.3 | Minus |
| 2R | 25286936 | 2R | 10473269..10473409 | 149..9 | 705 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:24:48 has no hits.
UFO07771.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:43 Download gff for
UFO07771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| whd-RA | 246..1111 | 1..871 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:16:37 Download gff for
UFO07771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| whd-RD | 264..1129 | 1..871 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:39 Download gff for
UFO07771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| whd-RD | 264..1129 | 1..871 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:39 Download gff for
UFO07771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10473269..10473414 | 1..149 | 97 | | Minus |
| 2R | 10472493..10473212 | 150..871 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:16:37 Download gff for
UFO07771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6359998..6360717 | 150..871 | 99 | <- | Minus |
| arm_2R | 6360774..6360919 | 1..149 | 97 | | Minus |
