UFO07774.5prime Sequence
1120 bp (994 high quality bases) assembled on 2011-07-14
> UFO07774.5prime
CAGTCGACATGCCTTCTAGCGATCCCCTGCCGCCCAAGGAGGGCGCGCTC
TTCCGCAAGCTACTTAAATGCTACGAACTGAAGCAGTACAAAAATGGCCT
TAAACTGGCCAAGCAGATCCTGTCCAACCCCAAGTACATGGAGCACGGCG
AGACGCTGGCCATGAAGGGGCTTACTCTGAACGGACTGGGGCGCCGCGAG
GAGGCCTACAAGTATGTGCGTCTGGGTCTGCGAAACGACCTGCGCTCCCA
CGTTTGCTGGCACGTCTACGGACTGCTCCAGCGCAGCGACAAGAAGTACG
ATGAGGCCATCAAGTGCTACCGCAACGCGCTCAAGTGGGAGAAGGATAAC
CTGCAGATCCTGAAGGACCTGTCGCTTCTCCAGATCCAAATGCGCGACCT
CGAGGGCTACAAGGAGACGCGCCACCACCTGTTCACGCTGCGTCCCTCGC
AGCACGCCTCCTGGATCGGTTTCGCCATGAGCTACCATCTGCTGGGTGAC
TACGACATGGCCAACAGCATCCTGGAGACGTTCAGCCAGTCGCAAACGTC
GATTGAGGCGCACGATTATCGGCACTCGGAGCTGCTGCTCTACCAGAACC
AGATACTCATCGAGTCGAATCGTCTGCAGCAGGCCGTGGACCACCTGACC
AAATACCAGGGCCAGATCGTCGACAAGCTGGCCGTTCGCGAGACCATGGG
TGATCTGTACATCAAGCTGCAGCAGCAGGAGAAGGCAGTGCCCATCTTTG
AGTCTCTGATCCGCCGCAATCCGGAGAATGTGCTCTACTACGAGCAGTAC
ATTGCCGCCCGCCAGGTGACCGACTCAAGCGCCGTGGTGTCGATCTATCG
CGTGTTCCAGGAGCAGTATCCGCGCGCCCTGTGCCCTCGCCGCCTGCCTT
TGAACATCGCCAACGGCGACGAGTTCGCGTCGTGACCGACGAGTACCTGC
GCCGCGGTCTGCGTAAGGCATTCCGCCGCTATTTTGTCAACGTGCGCCAC
TCTTCACAGATACCGGAGAGGCCGCCGTTATCGGAGGAGCTGGCGCTGCA
GTATTTCGGAGACTTACCGGTTCGGCCACTTTTCTCGCGGAGATGCCGAG
CTCGGAATTCCCGTCAGCGA
UFO07774.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:25:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nat1-RB | 4013 | CG12202-RB | 639..1748 | 9..1115 | 5205 | 98.5 | Plus |
| Nat1-RA | 3738 | CG12202-RA | 364..1473 | 9..1115 | 5205 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:25:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19481018..19481507 | 66..555 | 2450 | 100 | Plus |
| X | 23542271 | X | 19481598..19482161 | 555..1115 | 2250 | 96.8 | Plus |
| X | 23542271 | X | 19480622..19480678 | 9..65 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:25:51 has no hits.
UFO07774.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:52 Download gff for
UFO07774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nat1-RA | 465..1582 | 1..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:17:12 Download gff for
UFO07774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nat1-RA | 359..1476 | 1..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:04 Download gff for
UFO07774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nat1-RA | 359..1476 | 1..1119 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:04 Download gff for
UFO07774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19480617..19480678 | 1..65 | 93 | -> | Plus |
| X | 19481018..19481506 | 66..554 | 100 | -> | Plus |
| X | 19481598..19482164 | 555..1119 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:17:12 Download gff for
UFO07774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19374650..19374711 | 1..65 | 93 | -> | Plus |
| arm_X | 19375051..19375539 | 66..554 | 100 | -> | Plus |
| arm_X | 19375631..19376197 | 555..1119 | 96 | | Plus |
