UFO07775.5prime Sequence
1122 bp (1020 high quality bases) assembled on 2011-07-14
> UFO07775.5prime
CAGTCGACATGTCTGATAAAACCGTCGAGTTGATGAATCCCCATTTGGAA
ACAGCACGATCGGATTATTTATACCACCTGGACATCAATGTGGCCAATAC
CCGAGACACCAGTGAGTTACAGAATAGGTTCGGCGATGTTAGGGTCATCT
GCATGGGTGGAACGGGCTCCAGAATGCGGCAGTTAGCCCTTTACCTAAGA
GATATTCTGGTAGTGTCGGAGTCCGGCGATCCGGTGGATTTGTGCGAGCG
TGGCAACCGATATGCCATGTACAAGGTGGGTCCGGTACTGTGCGTGAGCC
ACGGCGTTGGATCCTCCTCCTTCAGTGTCGTGCTGCACGAGCTGATCAAG
CTCCTCAAATATGCGCGGTGCCAGGACCCCGTCCTGCTTCGGATTGGCAC
CTGCGGAGGACTTGGCGTCCCTCCCGGCACAGTGGTGGCCAGCAAAAATG
CCTTCAATGGTCTGCTGCGCAACGAGCATGAAATCGCTATTCTCGGACAG
CGAGTGGTGCGTCCGGCTCAGTTTTCCGAGGACGTGATCAGGGATTTACT
TGCATTCGGTGTCGACGCCAACGACGGATTTCAGACCATAAGTGCCAACA
CAATGGGAACAGATTGCTTTTACGAAGGTCAAGGTCGCACCGATGGAGCC
ATATGCGAGTACTCGGAGAAGGATAAGATGGAGTTCTTGCAGAAGTGCCA
CGATCTGGGAATCCGGAACATCGAGATGGAGGCCAGCATGTTCGCCTCCG
TCACCCAAAAAGTGGGGGTCAAAGCATGCGATGTATGCGTGACCCTGATC
GATCGCCTAAAGGGAGATCAGATTACTATTACTATTGACCAGAAGCACGA
ATTCGAGCAGCGTCCTTTTTCGTCGTGGGTCGCTACATTAAGAGGTTACT
GCAGCAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAA
GTGGTCATAATCATAATCATATCATAATCATATCACACTAGGCTAGGAGA
ATCCTGGTCATGACTAGTGCTTGATCTCACAATAAAAAACGCCCGGCGGC
CAACGAGCGTTCTGACAATTCCAGAATGGGAGTTCTGAGTCATACTGGAT
CTTATCAACAGGAATCCAGCCG
UFO07775.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:25:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17224-RD | 1118 | CG17224-RD | 125..1024 | 9..907 | 4415 | 99.4 | Plus |
| CG17224-RC | 1438 | CG17224-RC | 201..1100 | 9..907 | 4415 | 99.4 | Plus |
| CG17224-RB | 1251 | CG17224-RB | 258..1157 | 9..907 | 4415 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:25:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3017383..3017726 | 486..143 | 1675 | 99.1 | Minus |
| 2L | 23513712 | 2L | 3016926..3017121 | 821..626 | 965 | 99.5 | Minus |
| 2L | 23513712 | 2L | 3017177..3017320 | 629..486 | 720 | 100 | Minus |
| 2L | 23513712 | 2L | 3017778..3017903 | 145..20 | 630 | 100 | Minus |
| 2L | 23513712 | 2L | 3016779..3016869 | 907..818 | 405 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:25:56 has no hits.
UFO07775.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:52 Download gff for
UFO07775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17224-RC | 188..1100 | 1..911 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:17:13 Download gff for
UFO07775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17224-RB | 249..1161 | 1..911 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:07 Download gff for
UFO07775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17224-RB | 249..1161 | 1..911 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:07 Download gff for
UFO07775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3016775..3016865 | 822..911 | 96 | <- | Minus |
| 2L | 3016926..3017119 | 628..821 | 99 | <- | Minus |
| 2L | 3017179..3017320 | 486..627 | 100 | <- | Minus |
| 2L | 3017384..3017725 | 144..485 | 99 | <- | Minus |
| 2L | 3017780..3017903 | 20..143 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:17:13 Download gff for
UFO07775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3017179..3017320 | 486..627 | 100 | <- | Minus |
| arm_2L | 3017384..3017725 | 144..485 | 99 | <- | Minus |
| arm_2L | 3017780..3017903 | 20..143 | 100 | | Minus |
| arm_2L | 3016775..3016865 | 822..911 | 96 | <- | Minus |
| arm_2L | 3016926..3017119 | 628..821 | 99 | <- | Minus |
