UFO07780.5prime Sequence
1127 bp (1012 high quality bases) assembled on 2011-07-14
> UFO07780.5prime
CAGTCGACATGATATTACTAAATTGCCTAGTAATATGCCTGTGCATATTT
TCCTGTGGTGCCCAGGACTCTTCCTTGGACAAATTGATATCGGACATCTT
TAAAACGGACGAAACACCCAAACCATCATCCCCTCCCCCGCCAGTGGTGA
ACCCCAAGGATTCGTCCGGTAGCACGGGATCCGAAAACGGAGGATCCAGT
TCAACGCAGTACCAGTCCTGTGGCGATCAAAAGGAGTGTGTTCCTCGCTG
GTTGTGCGCCAATGATACGATTAACACCAGTGGCGATGGTATCATTGACA
TTCGACTTGGTACGGACGCCGAATGCAAGAACTATTTGGATCTTTGCTGT
GATCTGCCCAACAAGAGAAAAGATCCGATTTTCGAGTTTAAGCCTGATCA
TCCCGAGGGCTGCGGTTACCAAAATCCCAACGGCGTTGGCTTTAAGATCA
CTGGAGCTGTCAACCAGGAGGCCGAATTCGGCGAATTCCCCTGGATGCTG
GCCATTCTACGGGAAGAAGGCAACCTTAACCTGTACGAGTGTGGAGGAGC
ATTGATAGCTCCCAATGTGGTTCTGACCGCGGCGCATTGCGTTCACAACA
AACAGCCCAGTAGCATTGTTGTGAGAGCTGGCGAATGGGATACGCAAACG
CAGACTGAGATCAGAAGGCACGAAGACCGATATGTCAAGGAAATAATCTA
CCATGAGCAGTTCAACAAGGGATCGCTCTATAACGATGTGGCTGTCATGC
TGTTGGAAAGTCCATTCACCCTCCAGGAGAACATTCAGACCGTTTGCCTG
CCCAATGTGGGTGATAAATTCGATTTCGATCGCTGCTATGCCACCGGCTG
GGGCAAGAACAAGTTCGGCAAGGATGGGGAATATCATGTTATCCTGAAGA
AGTCGACATGCCCGTGGTGCCCGAGCAGCAGTGCGAGACGAATCTGCGCG
AACTCGACTCGGCAGGCATTTCATTCTGCACGACAGCTTCATTTGCGCCG
GCGGGTGAGAAAGACAGACACCTGCAAGGGTGATGGGTGGCTTCCCCCAC
TGGGTGGTGTCCATGCTGGCCAAAAAACCGCTTTCAGTCCGCCGCATGGT
GCCTGGGGCATCGGATGCGCGGAGGTA
UFO07780.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:26:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5390-RB | 1372 | CG5390-RB | 59..1179 | 9..1126 | 5125 | 97.7 | Plus |
| CG5390-RA | 1401 | CG5390-RA | 88..1208 | 9..1126 | 5125 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:26:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10304352..10304770 | 1036..621 | 1855 | 98.3 | Minus |
| 2L | 23513712 | 2L | 10305149..10305505 | 365..9 | 1770 | 99.7 | Minus |
| 2L | 23513712 | 2L | 10304827..10305085 | 621..363 | 1265 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:26:15 has no hits.
UFO07780.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:55 Download gff for
UFO07780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5390-RA | 83..1208 | 2..1126 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:17:20 Download gff for
UFO07780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5390-RA | 83..1208 | 2..1126 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:16 Download gff for
UFO07780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5390-RA | 83..1208 | 2..1126 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:16 Download gff for
UFO07780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10304262..10304769 | 622..1126 | 95 | <- | Minus |
| 2L | 10304827..10305082 | 366..621 | 99 | <- | Minus |
| 2L | 10305149..10305512 | 1..365 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:17:20 Download gff for
UFO07780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10304262..10304769 | 622..1126 | 95 | <- | Minus |
| arm_2L | 10304827..10305082 | 366..621 | 99 | <- | Minus |
| arm_2L | 10305149..10305512 | 1..365 | 98 | | Minus |
