UFO07781.5prime Sequence
1137 bp (1056 high quality bases) assembled on 2011-07-14
> UFO07781.5prime
CAGTCGACATGTCGACACGGAAAAAGATGGGGAGCTGCTCCAATGCCATC
GAGAAGGGAAATTCCCCGATAGGTAATTGCTGGCCGACCATCCTGACGCT
TCTCATCGTGGCCAACTTGGTCGACGCACTGAAGACCGGGGAATCCATCC
AGTTGGCAACCGGGAGCCAGCCATCACTGAGCATAAACAATGCGGACGAC
AGCAGCCTGGAGCAGCTCATCGAGATGAGGCTGAATGAGTCTGCGTCCGC
ATCCTACCAGAACAACCAGTCAGCCAGCCAGGAGCTGTTGTCCCGGAAAC
GACGTTATTTGGTATTTCCGGAAGGCAGCTCCTTTCAGATGGTGTACGAT
GAGATTGTGGGAGTGGTGGACCACACGAACTACTTGATTCTGGGCATTAC
GGTGGCCCTGGCCTGGGAGCTGCCCAGCAAGCCGCCCAGCGAGGAGCTGG
ACGATCTGCTGACCAAGTTGGAGGACGGCACAATAGACATCAGTCGCAAC
GACACAGTGTCGAACATAACCTATGTGGATGTGGATGCAGATGCCACGAC
GACCACGACGAGCAGGCCGGCGGACTACAAGCCCAACTACATCAATTTGT
CGAGTTACGGCTCCTCCTCCTCCTCCTCCTCCTCGAGTGGCAGCAACTCC
TACTACAGCCTTTCGCCCGTTTTCCGCCCTCCGATGCATCCGTCGCATCG
ATATGCGGATAGTTATTACTCCTCACGTCCAAAGGGGGGCAGGCGGAAAG
GACAATCACTATTACTACAGTCGGCCCGGGGTCAGCTCCAGCTCCAGCAA
TCCATTCGCCAAGTGGACGAGACCCTACTCTCACGCCCAGAACTCACGCT
ATCCCTACTGGGCTTTAAACTCAAGACTCAAAGATAGATACTACGGCTAC
AAAGTCAACAGGCAGCACCGCCAGCGCGCAGCGACGACAGGACAGTACCA
CCACCACCAGCGCACCCACCACCAGTTCGACCCACTCGAAGCAGCTCCCT
CGACATCATCGCAATATATCCGGTGTTTGGCAAGCGCAGCATTCCGGATG
CAGCCCATCCACATAACGCCAGCGACGCAGTGATGCCCCTGACATGAGAC
AGGATGAGCCGCCTGGAACAACTCCGAATTCAAGCAC
UFO07781.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:26:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17782-RA | 1484 | CG17782-RA | 27..1160 | 9..1137 | 5240 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:26:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24371649..24372181 | 875..342 | 2620 | 99.8 | Minus |
| 3R | 32079331 | 3R | 24372403..24372736 | 342..9 | 1670 | 100 | Minus |
| 3R | 32079331 | 3R | 24371309..24371519 | 1082..874 | 690 | 95.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:26:20 has no hits.
UFO07781.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:56 Download gff for
UFO07781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17782-RA | 27..1160 | 9..1137 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:17:21 Download gff for
UFO07781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17782-RA | 27..1160 | 9..1137 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:17 Download gff for
UFO07781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17782-RA | 27..1160 | 9..1137 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:17 Download gff for
UFO07781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24371250..24371517 | 876..1137 | 92 | <- | Minus |
| 3R | 24371649..24372180 | 343..875 | 99 | <- | Minus |
| 3R | 24372403..24372736 | 9..342 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:17:21 Download gff for
UFO07781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20196972..20197239 | 876..1137 | 92 | <- | Minus |
| arm_3R | 20197371..20197902 | 343..875 | 99 | <- | Minus |
| arm_3R | 20198125..20198458 | 9..342 | 100 | | Minus |
