UFO07784.5prime Sequence
1020 bp (1004 high quality bases) assembled on 2011-07-14
> UFO07784.5prime
CAGTCGACATGAGTCGCACGGAGCAGACGTTGGAAGACCTGAAGTCGTAT
TTGCGGAGTCACAGCAAAATCCGCGAGCAGCGGTCGCACATGTCTAAGGT
TCACTCGGTCTGCTGGAATGCCGATGGTCGTTACCTGGCCTCCGGAAGCT
TCGACAAGACGGTGGTCGTCTACTCGCTGGAGCGGGACCGCTTCTTGAAG
GGCAACACATACCGGGGACACACTGCGTCCGTGGACCAGCTGTGTTGGCA
TCGCACCAATCCCGACCAGTTTGCCACCGCAAGCGGAGACAAGACCGTGC
GCATCTGGGACATACGAGTTGGAAAATGCGTATCGGTGACGAACACCAAG
GGGGAGAATATCAACATTGCCTGGTCGCCCGATGGCAAAACGATCGCCGT
GGGCAACAAGGAGGATCTGATCACCTTTATAGACACACGCACGAACAAGA
TTCGCGTGGAGGAGCCGTTCAGCTTCGAGGTCAACGAGATATCGTGGAAC
AACACCAACGACCTGTTCTTCCTAACCAACGGACTCGGCTGCATGCATAT
CCTCAGCTATCCCAGTCTCGAGCACCAGATGACCCTGAAGGCCCATCCCG
CCAACTGCATTTGCATTGAGTTCGGACCCACGGGTAAATACTTTGCCACT
GGCTCGGCGGACGCACAAGTCTCCTTGTGGGATGCCAACGAGCTGGCCTG
CCTGCGCATGATCAGCCGCCTGGAGTGGCCCGTCCGCACCATATCGTTTA
GCCACGACGAGCGAATGATTGCCTTGCCCAGCGAGGACCTCATTATCGAC
ATTGCCTTCACGGAGACGGGCGAGCGGGTAACCGACATTCACGTGGACGC
CTCCACGTTCACGGTGGCCTGGCATCCGAAGCAATACCTGCTGGCCTACG
CCCTGCGATGAGAAGACAACGATCGGCGACGTGACGCTGGCACGTAAAGA
TAATGGCTTTTCGGAGCAAGCTTTCTAAGACCATTCGTTTGGCGCGCCGG
CCCCAGGTAAGTGTCATAAT
UFO07784.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:25:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tex-RA | 1063 | CG9615-RA | 71..1029 | 9..965 | 4640 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:25:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8307893..8308432 | 636..97 | 2700 | 100 | Minus |
| 3R | 32079331 | 3R | 8307507..8307841 | 965..633 | 1435 | 97.9 | Minus |
| 3R | 32079331 | 3R | 8308484..8308575 | 100..9 | 445 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:25:47 has no hits.
UFO07784.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:51 Download gff for
UFO07784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tex-RA | 39..1010 | 1..969 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:17:09 Download gff for
UFO07784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tex-RA | 62..1033 | 1..969 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:02 Download gff for
UFO07784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tex-RA | 62..1033 | 1..969 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:02 Download gff for
UFO07784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8307503..8307840 | 634..969 | 97 | <- | Minus |
| 3R | 8307896..8308430 | 99..633 | 100 | <- | Minus |
| 3R | 8308486..8308584 | 1..98 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:17:09 Download gff for
UFO07784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4133225..4133562 | 634..969 | 97 | <- | Minus |
| arm_3R | 4133618..4134152 | 99..633 | 100 | <- | Minus |
| arm_3R | 4134208..4134306 | 1..98 | 94 | | Minus |
