UFO07788.5prime Sequence
1136 bp (1041 high quality bases) assembled on 2011-07-14
> UFO07788.5prime
CAGTCGACATGCACGAACTCATTGGCAAATACAGCCATTCGGACATGGAC
ATGCTGAAGGATCAGCTGAAGCGTGGGGGCTACATGGGCGCCCTTGGTCC
GCCCACGCCCGGCACATCCGCCCCCTCGCCCTTCCTGATGCCCGCCGAAT
TCTACAAAAGCCTGCTCGCCAGCGCCGTTCTGCAACAGCAACAGCAGCAC
AAGTTCTACGCCGGCACGCCCTCACCCAGTCCCGCCCCCAGTTTGTCACC
CACCTCAGGTCGCCACTTGCTGTTTTCCACGGCAGCTGCGGCAACCGCTT
GTGCTCCGGAGAATGGTCACGTGAAGACGGAGCTCGAAGAGCAGGACCAG
CAGAACGGGATGCCGGAAACCGTCGGACATGAGGAGCAGAAACCCATCAT
CGAAGAGAACCCAACGCCGAATAAGCCGCACAACAACAACGGTTACTCGT
GGTCCACCGGCAACAACAACGAGGTTGTCAGTCATAGCAGCAACGGCCAC
ACCAACAACCACCCAACAACACCACCCACTCCGCCCAACGAGGCCAGCGC
CACCCAAGCGACTTCAGTGTCCGCAATTAATTTGAATCAAGCCCAACCCG
CATCACAGACGCGTTCAAACTTTGGCAGCTCCATAAAGTCACCACCATCA
GAACCGGACGCGGTCACTGCTGCCACGTGCAAAAGTCAGGAGAATAACTC
CGGCCAGAACCCCACCCCCAACTCCCTCTCCGATCACAACCCGGCTCACA
ACCTTAACTCGAATTCAACGGCCGCTGCCGTGGCCGCCGCTGCCGCCGCC
GCCGCCGCTGCCAACATGCCGATCGGCGGCGTCCAGGGTCAGAATCCCAC
CCAGGGCCTGGTCCACTGGATGAGTGCCGTGATGGCCGAGCACATGACCG
GGCCAGACGCACCACGATCCTGGCGCCGTAGGCATGCACTACATGTGGAA
CGGGAACGTTGACGTGAGTATCAACTGGATACTGGATCACGGGGGCGGCA
AATTCGTGGGGCTTGTGCAAGCTTTCTAGACCATTCGTTGGCGCGGGCCA
GGTAGTGGTTCATAATCATATCTAATCTTATCATATCACACTTAGCCTAG
AGAATCCTGTCATGACTAGTGGCTTGGATTCTTCAC
UFO07788.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:26:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rn-RF | 4270 | CG42277-RF | 61..1015 | 8..963 | 4755 | 99.9 | Plus |
| rn-RG | 5014 | CG42277-RG | 1220..1759 | 423..963 | 2680 | 99.8 | Plus |
| rn-RE | 5014 | CG42277-RE | 1220..1759 | 423..963 | 2680 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:26:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7300580..7301176 | 1016..423 | 2760 | 99 | Minus |
| 3R | 32079331 | 3R | 7301759..7302173 | 422..8 | 2075 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:26:42 has no hits.
UFO07788.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:59 Download gff for
UFO07788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rn-RD | 54..1078 | 1..1025 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:17:34 Download gff for
UFO07788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rn-RF | 54..1015 | 1..963 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:25 Download gff for
UFO07788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rn-RF | 54..1015 | 1..963 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:25 Download gff for
UFO07788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7300573..7301176 | 423..1025 | 98 | <- | Minus |
| 3R | 7301759..7302178 | 1..422 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:17:34 Download gff for
UFO07788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3126295..3126898 | 423..1025 | 98 | <- | Minus |
| arm_3R | 3127481..3127900 | 1..422 | 99 | | Minus |
