UFO07789.5prime Sequence
1127 bp (1009 high quality bases) assembled on 2011-07-14
> UFO07789.5prime
CAGTCGACATGCACCCAGGGCAAATTGAGGTCAACGAGATCAATGGCTAT
TGGACATTTCTGCTGAGCATCGATTGGAAGGATCCCTGGCTTATTGGCCT
TATTTTGGCGCATATCTTAACCACCACCACTGCGCTGCTCAGCCGGAACA
GCTCCAACTTCCAGGTTTTCCTCTTCCTAGTACTGTTGCTGGCAGTCTAC
TTCACCGAAAGCATCAATGAGTTCGCTGCTAACAACTGGAGTTCCTTTTC
CAGACAACAATACTTCGATAGCAACGGCCTGTTTATCTCGACAGTTTTCT
CAATACCTATTTTGCTTAATTGCATGCTTTTGATTGGCACTTGGCTCTAC
AACTCCACGCAGCTGATGGTGACTCTAAAAACAGCGCAGCTCAAGGAGCG
AGCTCGCAAGGAACGCCAGACTAAGGCGGATTCGGAATCCATAGCACATA
AAAAGGCAGAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAG
GTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCC
TAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACG
CCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTC
ATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACG
CCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTG
CCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGG
CATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGG
GGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAACTGGTGAAAC
TCACCCAGGGATTGGCTGAGACGAAAAACATAGTCTCATAAACCCTTTAG
GGAAATAGGCCAGGTTTCACCGTACACGGCACATCTGCGATATATGTTGT
AGAACTGCCGGAATCGTCTGGTATTCACTCCAGAGGCGGATGAACGGTTC
AGTGCTCATGGAAACGGGGTAACAGGGTGACCTATCCCATATCACAGCTC
ACGGCTCTTCATGCCATCGGATTCGGA
UFO07789.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:26:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30051-RC | 676 | CG30051-RC | 78..530 | 9..461 | 2265 | 100 | Plus |
| DUBAI-RB | 4024 | CG8830-RB | 1..64 | 250..187 | 320 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:26:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12436514..12436663 | 187..336 | 750 | 100 | Plus |
| 2R | 25286936 | 2R | 12436719..12436844 | 336..461 | 630 | 100 | Plus |
| 2R | 25286936 | 2R | 12436321..12436438 | 69..186 | 590 | 100 | Plus |
| 2R | 25286936 | 2R | 12436197..12436256 | 9..68 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:26:47 has no hits.
UFO07789.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:22:00 Download gff for
UFO07789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30051-RC | 94..561 | 1..469 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:17:37 Download gff for
UFO07789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30051-RC | 71..538 | 1..469 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:28 Download gff for
UFO07789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30051-RC | 71..538 | 1..469 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:28 Download gff for
UFO07789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12436719..12436844 | 336..461 | 100 | == | Plus |
| 2R | 12436190..12436256 | 1..68 | 94 | -> | Plus |
| 2R | 12436321..12436438 | 69..186 | 100 | -> | Plus |
| 2R | 12436514..12436662 | 187..335 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:17:37 Download gff for
UFO07789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8324224..8324349 | 336..461 | 100 | == | Plus |
| arm_2R | 8323695..8323761 | 1..68 | 94 | -> | Plus |
| arm_2R | 8323826..8323943 | 69..186 | 100 | -> | Plus |
| arm_2R | 8324019..8324167 | 187..335 | 100 | -> | Plus |
