UFO07790.5prime Sequence
1142 bp (1032 high quality bases) assembled on 2011-07-14
> UFO07790.5prime
CAGTCGACATGTTGACCACTCACCATCTGCACCACCTGCACCACCATCGC
GGCAGTACGGCCGTGGAGCTGGACAAGATCACCAACCTGAATACGCTCAT
CGTGGAGATCAACAGCCATGTGGCACTGTTCCGGGATATGCTGATACACG
TCGGCCAGGCCAAGGATTGCCCCGAGCTCCGGGAGAAGATCCGCAAGTTG
CGTCGCACCTGCGTGGAGGCACTCAAGCACACCGCCCAGATCCTGATGCC
TCAAGTCAAGAGCGCCATGGCCGACGGCATCCTCACCGACAACCCGCATT
TGGTGCTCCTGTTCTACATGGCCCAGTTGTTCCTACGTGAACTTGTGAAA
AGCTATCGCCTCATACAAGTCGTGCCAATGGATATGTCCGGCTATTATGA
GAACCGAGCCGGTCCCTCGAACCTGGGCAATGTCATCAGCCAGATATTGT
TGTGCAAACAGTTCACGCCCGACTTCAACGAGGAGGAATTATGCAGCATC
ACCAAGGATTCGCAGGACATTGCCGTGCTTCTGGCCGAGATGCAGGAGTA
TATGCCGCAGCACGAGGCGTACTTGGAACGCAACGCGGCGCTGGACACAA
CTGGACCTTGGCAGGCCAAGCGGCGTCAGAACTACATCTGCAAGAACATG
AGCCTGCTCTGCTGCGTCTCCAGGCCGAACTATCTCGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATA
ATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTG
CTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAA
CAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTC
CAAGCGAGCTCGATATCAAATTACGCCCGCCCTGCCACTCATCGCAGTAC
TGTTGTATTCATTAAGCATTCTGCCGACATGGAAAGCCATCACAAACGGC
ATGATGAACCTGAATCGCAGCGGCATCAGCACCTTGTTCGCCTTGGCGTA
TAATATTTGCCATGGGTGAAAACGGGGGCGAAGAAAGGTTGTCATATTGG
CCACGTTAATCAAACCTGGGTACCTCACCAAGGATTGGTCTG
UFO07790.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:26:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34351-RD | 3223 | CG34351-RD | 529..1208 | 7..686 | 3400 | 100 | Plus |
| CG34351-RC | 3223 | CG34351-RC | 529..1208 | 7..686 | 3400 | 100 | Plus |
| CG14340-RA | 1030 | CG14340-RA | 527..631 | 413..517 | 180 | 78.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:26:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4719804..4719981 | 399..576 | 890 | 100 | Plus |
| 2L | 23513712 | 2L | 4712288..4712455 | 95..262 | 840 | 100 | Plus |
| 2L | 23513712 | 2L | 4717723..4717861 | 261..399 | 695 | 100 | Plus |
| 2L | 23513712 | 2L | 4720340..4720450 | 576..686 | 555 | 100 | Plus |
| 2L | 23513712 | 2L | 4705735..4705823 | 7..95 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:26:51 has no hits.
UFO07790.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:22:00 Download gff for
UFO07790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34351-RC | 523..1215 | 1..692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:17:39 Download gff for
UFO07790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34351-RC | 523..1215 | 1..692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:29 Download gff for
UFO07790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34351-RC | 523..1215 | 1..692 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:29 Download gff for
UFO07790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4719805..4719981 | 400..576 | 100 | -> | Plus |
| 2L | 4720341..4720457 | 577..692 | 97 | == | Plus |
| 2L | 4712289..4712455 | 96..262 | 100 | -> | Plus |
| 2L | 4717725..4717861 | 263..399 | 100 | -> | Plus |
| 2L | 4705729..4705823 | 1..95 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:17:39 Download gff for
UFO07790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4705729..4705823 | 1..95 | 96 | -> | Plus |
| arm_2L | 4712289..4712455 | 96..262 | 100 | -> | Plus |
| arm_2L | 4717725..4717861 | 263..399 | 100 | -> | Plus |
| arm_2L | 4719805..4719981 | 400..576 | 100 | -> | Plus |
| arm_2L | 4720341..4720457 | 577..692 | 97 | == | Plus |
