UFO07791.5prime Sequence
1115 bp (1024 high quality bases) assembled on 2011-07-14
> UFO07791.5prime
CAGTCGACATGTCGTCCTACATTTCGCGTCTACTTAAGGCTCAGTCCGCC
TCCAAACGTCTGATCTCCAATTTAACCCAGCGCGACGGAAAGCTAAGCTC
TTTGCTTCGACGACTAGGTTTACAGTGGCAAGGATCAGCCGCTGCTCCTC
AACAGCGTCCCATATCCACAACTCAGGTGCAAAAGTCAGCGCTAATTGCG
GACGATCAACTGGTCACCGGGATTCAGAAGCGCGAAATGCTGCTGGCCAA
GCAGGGCTGCGAGGACCCTTGGGGTTTCAGCAAGGTGATCAGGCGCGGAT
CGGGAAGGGAGAACGACCCCACCGTCGTGCCATCGGCGTTCGATGCACGC
CTCGTAGGCTGTCTGTGCCTGGATGACCGCTTGCCCAAGTGGATGTGGAT
TGAGAAGGACGAGGGACCGAAGCGGTGCGAGTGCGGCCACTACTTCATCC
TCAAGAATGTCCCACCCGTTGCAAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCA
CAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAA
TAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGT
TCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATAT
CAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTA
AGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAAT
CGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGG
TGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAA
CTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATCTCAATA
AACCCTTTAGGAAATAGGCCAGGTTTTCACGTACACGCCACATCTGCGAA
TTTATGGTGTAGAACTGCCGAATCGTCTGGTATCCCTCCGAAGGCGAATG
AAAACGTTCAGGTTGCTCATGGAAACGGGTTAACAAGGGTGAAACACTAT
CCAATACCAGTCACG
UFO07791.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:26:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11043-RA | 647 | CG11043-RA | 101..562 | 9..470 | 2310 | 100 | Plus |
| CG9596-RC | 2175 | CG9596-RC | 1553..1835 | 470..188 | 1415 | 100 | Minus |
| CG9596-RC | 2175 | CG9596-RC | 1890..2070 | 189..9 | 905 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:26:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6559766..6560048 | 188..470 | 1415 | 100 | Plus |
| 2L | 23513712 | 2L | 6559531..6559711 | 9..189 | 905 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:26:55 has no hits.
UFO07791.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:22:01 Download gff for
UFO07791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11043-RA | 101..562 | 9..470 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:17:41 Download gff for
UFO07791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11043-RA | 101..562 | 9..470 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:31 Download gff for
UFO07791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11043-RA | 101..562 | 9..470 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:31 Download gff for
UFO07791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6559531..6559711 | 9..189 | 100 | -> | Plus |
| 2L | 6559768..6560048 | 190..470 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:17:41 Download gff for
UFO07791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6559531..6559711 | 9..189 | 100 | -> | Plus |
| arm_2L | 6559768..6560048 | 190..470 | 100 | == | Plus |
