UFO07793.5prime Sequence
1138 bp (1018 high quality bases) assembled on 2011-07-14
> UFO07793.5prime
CAGTCGACATGCGCTGCGCTGTAAAAAATTGCGGAAATAATAATCGTATT
GCCAATAGAACGAAATGGAGATACTTTCACTTCCCCAAAGAAAAGCCAAA
CCTCCAAAGGTGGATAGATTTTTGCCAGCGAGATAATATAAACCCCACAA
CTGCCTGTATTTGCAATGAGCACTTTGCACCCAATGACTTTGAGCGAAAT
ATGCAATACGAATTGGGCTTTAGCCGCAAAAATCCAACAAAACTAAAGCC
CGGCTCATTTCCGAGTGTGAATGGACCCCAAAAGTTGGCGAAGGAACTGC
GAGGAAGTATCAAAAGGGGCTCCAAAAGTGTTCCCTTAGCTGGGTCTACG
AAAATGTCCAATATAGGCTTTGATCCACACCATGCAGGAACGCAATCCTC
GGAAGGCCACGAAACCATAGAAATCCAACTCTGTGGTTTTAATACAGATA
TTGAGGGCTTCGAAGAAGCCGAAGATGACGACTGTCCTTCAGGTCCCCGG
CTCGTGGAAGTAGAAATATTGGATCCTCTTAACCCGCAGTCAAATGCCAA
GGATCATGTGGAGATAATCGATTCGGAAGGCGACAGTTATGTGAAGCACT
TGGAGCTCGAAATATGCTCCTTAAAGCGTGAGGTATTTTTCCTCAAAGAC
GAATACCAGAAGATAAAGGCTGAAATGCGTAATCTCAAGGACACAATAAA
AAGATCAGAGGAAGAACTCGCAGAAAAACAACTCCAAGGTGTTGTTAAAA
GCAGAAAAAGGAAATCTCAGTTTGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAATCCAGATGGA
GTTCTGAGTCATTACTGGATCTATCACAGAGTCCAAGCGAGCTCGAATAT
CAAATTACCCCCCGCCTGCAACTCATCGCAGTAACTGTTGTAATTCATAA
GCATCTGCCGAACTGAAGGCCATCACAAACCGCATGATGACCCTGATTCG
CCAGCGCCATCGAACCTTGTCGCCTTGCATATAATATT
UFO07793.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:27:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14135-RB | 937 | CG14135-RB | 48..812 | 9..773 | 3825 | 100 | Plus |
| CG14135-RC | 1064 | CG14135-RC | 124..873 | 9..758 | 3750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:27:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11691895..11692359 | 149..613 | 2310 | 99.8 | Plus |
| 3L | 28110227 | 3L | 11692422..11692566 | 614..758 | 725 | 100 | Plus |
| 3L | 28110227 | 3L | 11691694..11691838 | 9..153 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:27:04 has no hits.
UFO07793.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:22:02 Download gff for
UFO07793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14135-RB | 48..816 | 9..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:17:46 Download gff for
UFO07793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14135-RB | 48..816 | 9..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:33 Download gff for
UFO07793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14135-RB | 48..816 | 9..777 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:33 Download gff for
UFO07793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11692422..11692566 | 614..758 | 100 | -> | Plus |
| 3L | 11691694..11691838 | 9..153 | 100 | -> | Plus |
| 3L | 11691900..11692359 | 154..613 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:17:46 Download gff for
UFO07793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11684794..11684938 | 9..153 | 100 | -> | Plus |
| arm_3L | 11685000..11685459 | 154..613 | 100 | -> | Plus |
| arm_3L | 11685522..11685666 | 614..758 | 100 | -> | Plus |
