UFO07802.5prime Sequence
1132 bp (1004 high quality bases) assembled on 2011-07-14
> UFO07802.5prime
CAGTCGACATGCGTAGCATGGGCTGCTCCAGTTCCAAGACCTCCGCCACC
GTAGAAGACACCAAATCATCGAAGCCCTGCTCCTGCTCAGCCAAGTCCAG
TACAACGAGAATGGCCGCCAAGAAGGAGTACCCTGCCTCGGAGGCCTTCA
CCATTCCTTTGGAGAGCGATGACGGTCCGGAGATGCCGCTAAACGAGACG
GTTCGCCAGCCACCGAAGAGGATTCAGCAACTGATGCAGGAGGCGGCCAG
CTCGGAGCCACTCACCTTGGAGGAGCTGGAGGAGAAGCAGCTAAAGGCCG
AGCAGAGGCGCCAGGAGCTCATGCAGCAGAAACTGGAGATCATACAAAAG
AATGCCCAGATGCTCATGAAGCCTCATGAGGAAACCGTTGGCGAAGGCGA
AGGAGACCGGAACGAAGGCAAGGAGGAACTACCCGAAAAGGTCGCAAGCT
TTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCAT
AATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATG
ACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCG
TTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAAC
AGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCAT
CGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCA
CAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCC
TTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCA
TATTGGCCACGTTTAAATCAAACTGGTGAAACTCACCCAGGGATTGGCTG
AGACGAAAAACATATTCTCAATAAACCCTTTAAGGGAAATAGGCCAGGTT
TTCACGTAACACGCCACATCTTGCGAATATATGTTGTAGAACTGCCGGAA
TCGTCGTGTATTCCCTCCAGAGCGATGAAAACGTTTCAGTTGCTCATGGA
AACGGGTGTAACAGGTGAACACTATCCATATCACAGCTCACGTCTTTCAT
TGACTTCGCATCCGATGACCATTCATCAGGCG
UFO07802.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:27:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13578-RA | 855 | CG13578-RA | 297..731 | 9..443 | 2175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:27:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24378306..24378616 | 133..443 | 1555 | 100 | Plus |
| 2R | 25286936 | 2R | 24378127..24378250 | 9..132 | 620 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 00:27:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7258..7370 | 218..329 | 120 | 59.6 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8711..8823 | 218..329 | 120 | 59.6 | Plus |
UFO07802.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:22:08 Download gff for
UFO07802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13578-RA | 291..741 | 1..455 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:18:04 Download gff for
UFO07802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13578-RA | 291..741 | 1..455 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:48 Download gff for
UFO07802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13578-RA | 291..741 | 1..455 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:48 Download gff for
UFO07802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24378121..24378250 | 1..132 | 96 | -> | Plus |
| 2R | 24378306..24378616 | 133..443 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:18:04 Download gff for
UFO07802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20265829..20266139 | 133..443 | 100 | == | Plus |
| arm_2R | 20265644..20265773 | 1..132 | 96 | -> | Plus |
