UFO07813.5prime Sequence
1133 bp (1004 high quality bases) assembled on 2011-07-14
> UFO07813.5prime
CAGTCGACATGATTGCCAAGCTGCGCAAGATTTATCCCAGTGGAAAGGTG
GTTAGCCATTCCCTCGCTCCCTGCTCCACAGCGGATCTGAACAATGCTGA
ACTTGTTTCCAATGTCAAGAAAAGGCGAGCCGAATATCTCGTCGAACGAA
TGCAGCGACTGCTGCTCTTTCTGACCGTCTTCCTTCTGTTTCCCGTGGTG
ATCTTCGTCATCTTCAAGTTCTTGATTATGGAGCCGCTCTACGGAAACAG
CGATGACAATGTGGGCATTGGATCCGGCGTAGCCACGGTAATTGTGATGC
ATGTCCTGGTCACGGGCTATATCCTGCGCCTGATCTTCCTTCAAGAGATT
TCGAGCATGGAGAAGCTGGAGTGGGAAGTTCTGATGCCACCAAACACCCA
AATTCATGGATCCGTGTTCATTGTCCTGCTGCTGATGTCCTACTGTTCCC
TAATAATTGGCTTTCCCATAGCCACCTTTTTTGCCCTGAAATTTGTGGTG
CTCAAGAGCTATGCCCATATCAATGCCGATATTATTTCGACCATTTGCAC
CGTAGTTGCAGTTCATGCAGCAGTTGGCTTTTACATCTACCGAGCCATCT
ATGCAAAGAGTGTGACGGCCAAAAGCGCCAAAATATCTCTGGCAAGCTTT
CTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAA
TCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGAC
TAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTT
CTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAG
GAGTCCAAGCGAGCTCGATTATCAATTTACGCCCCGCCCTGCCACTCCAT
CGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACAGGAAGCATCACA
ACAGCATGATGACCTGATCGCAGCGGCATCAGCACTTGTCGCTTGCGTAT
ATATTTGCCCATGGTGAAACGGGGCGAGAGTTGTCCATATTGCCAGTTTA
AATCAACTGTGAACTCACAGGAATGCCTGAACCAAAACATATTCTCATTA
AGCGTAGGAATAGCAGCTTCACGTACACGCCCA
UFO07813.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:28:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13829-RA | 810 | CG13829-RA | 21..653 | 9..641 | 3165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:28:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23160634..23161157 | 641..118 | 2620 | 100 | Minus |
| 3R | 32079331 | 3R | 23161208..23161318 | 119..9 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:28:17 has no hits.
UFO07813.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:22:14 Download gff for
UFO07813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13829-RA | 13..656 | 1..645 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:18:24 Download gff for
UFO07813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13829-RA | 13..656 | 1..645 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:01 Download gff for
UFO07813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13829-RA | 13..656 | 1..645 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:01 Download gff for
UFO07813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23160630..23161155 | 120..645 | 99 | <- | Minus |
| 3R | 23161208..23161325 | 1..119 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:18:24 Download gff for
UFO07813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18986352..18986877 | 120..645 | 99 | <- | Minus |
| arm_3R | 18986930..18987047 | 1..119 | 96 | | Minus |
