UFO07824.5prime Sequence
1104 bp (940 high quality bases) assembled on 2011-07-14
> UFO07824.5prime
CAGTCGACATGATAAAAACAAAGAGCAGCGACGACAAACTCGACACGCTC
CTCTCGCGCAGCGTGGTTCCGATCATCGATCTCGCCCACTGTGGCATCGA
GGAGGTGCCGGTCAAGTCGGTGGTCAACCGCGTGGGTCACCAGCTGAAGA
AAGCGCTCTCCGAGAAGGGCATGGCCCTGCTGGTCAACCATGGCATCTCC
GATGAGAAGCTCAAGACTGCCTGGGATCACCTGGATGACTTCGTGAATCT
GCCGCCGGACATCCGACAGCACTATATCCGTGCCGATGGAGACAAACATG
GCTACGTGAGTCGTGGTCAGCAGCAGCGATTCGATGGCAAGTCGCCGGAG
CTGCGTCACGCTTTCAATATCAGCACACTGAACGCTCAGAATCTGCCAGA
GGAGCCGCTGCCAGGATTTGCGGACCACATCAGCACCCTGGCCACGGACT
TCAAGGCGCTGGCCAGCTTTATACTGCAGGCGCTGGCCGTCTCCCTGGAC
ATTCCGCACACGTTCTTCCTCGAAAAGCACTCGCACATGCTGTCCGGCGA
CCACGACAACATGAGCTCCCTGCGCATGCTCTACTATCCGCCCATAGTGG
ACGACGAGCCCGGCCAGAACGACGTGATCAAGGGTCGCTGCCAGTACAGC
TACCAGCGCTGTCTGTCCAACCAGCCAGATTTCCGGCCGGAGCACAATCC
CCGCGACGAGGACGACCTCAACGAGGTGGATGGGCCCAATGGCCAATTGT
TCGAGCACAAGCTGGGCAACGGCGCCGTCATCCAGTGTCCACCACACGTG
GACTACGGCACCTTCACCCTGCTCTCCCAGGACTCGGAGGGCGGACTGGA
GGTGAGGCTGCCCGGCAGCGAAAAGTGGAATCGCGTGGGCCACCTGCCCG
GCTCATACTCGTCAACTGTGCGAGATCTTAAATTATCTGGACACAGGGAC
GATATGCTGGCATTGCAACATCGCGTGATATAACGGAGCAGGAAACCATT
TCGGGCTCGTGGGCGCCAACTCGATAGCGTTCTTCTGCCATCCGGACAAC
ATCCCACCGATATCGCCCCACGATTCTGCCCAATTCAGAATGGCAGATCC
AGGA
UFO07824.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:28:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5346-RA | 1921 | CG5346-RA | 480..1558 | 9..1089 | 5055 | 98.3 | Plus |
| CG33099-RA | 1248 | CG33099-RA | 739..830 | 798..889 | 205 | 81.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:28:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22521044..22521792 | 955..208 | 3600 | 99.6 | Minus |
| 3R | 32079331 | 3R | 22522034..22522150 | 209..93 | 585 | 100 | Minus |
| 3R | 32079331 | 3R | 22526787..22526872 | 94..9 | 415 | 98.8 | Minus |
| 3R | 32079331 | 3R | 22520567..22520689 | 1089..965 | 295 | 89.7 | Minus |
| 3R | 32079331 | 3R | 22529461..22529552 | 889..798 | 205 | 81.5 | Minus |
Blast to na_te.dros performed 2014-11-27 00:28:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 3746..3875 | 804..682 | 120 | 61.7 | Minus |
| opus | 7521 | opus OPUS 7521bp | 5723..5762 | 269..230 | 110 | 75 | Minus |
UFO07824.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:22:14 Download gff for
UFO07824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5346-RA | 469..1558 | 1..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:18:22 Download gff for
UFO07824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5346-RA | 471..1560 | 1..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:59 Download gff for
UFO07824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5346-RA | 471..1560 | 1..1092 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:59 Download gff for
UFO07824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22521035..22521790 | 210..965 | 99 | <- | Minus |
| 3R | 22522034..22522149 | 94..209 | 100 | <- | Minus |
| 3R | 22526788..22526878 | 1..93 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:18:22 Download gff for
UFO07824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18346757..18347512 | 210..965 | 99 | <- | Minus |
| arm_3R | 18347756..18347871 | 94..209 | 100 | <- | Minus |
| arm_3R | 18352510..18352600 | 1..93 | 94 | | Minus |
