UFO07825.5prime Sequence
1118 bp (1006 high quality bases) assembled on 2011-07-14
> UFO07825.5prime
CAGTCGACATGTCCTTTGTGTTGCAATTGGCCACCAGGACAGTACGAAGT
ACCATTGCTCAGGTGCGTGGCGTAGCCACCACAATGCCAAGGCAAATTAA
AGAGATTCATGAGAAGCAGGAGAACAGTGTAAAGATCTTCGAGGGCGTTA
ATGTGGAATCGCCGCGTGCTCACCTGATGCTTAAATCCGCCTGCCAGACC
AAGTTTTGCCCGGAATGCACCTTGGGCCTGGACATCAAGCACACGGATGT
GCTAATCCTGTCGCAGTATGTCCGTTCCGACGGCTGTATGCTGCCCAGAA
GGATCACCGGACTTTGCCACCGGCAACAAAAGAAGATGGGCACTCTGGTA
ACCATGGCTCAGAAGGCGGGACTGATGCCAAATCTGGCGCCCGAGTGGAG
TAAAAGAGATCCCAAGAAGCGCTTCGGCTGGCGCAAGTTCAACAAGTACT
TCCTGGAGTCCACAATTAAATACGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGG
AGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGA
TATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCA
TTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTG
AATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCA
TGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCA
AAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTC
ATAAACCCTTTAGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCT
TGCGAATTTATTGTTGTAGAACTGCAGAAATCGTCCTGGTATTTCACTCC
AGAGCGATGAAACGTTTCAGTTTGCTTCATGAAACCGGTGTACAAGTGAA
ACCTATCCATTACAGTCA
UFO07825.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:28:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS18A-RA | 581 | CG31450-RA | 84..550 | 7..473 | 2320 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:28:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8561948..8562315 | 473..106 | 1840 | 100 | Minus |
| 3R | 32079331 | 3R | 8562412..8562510 | 105..7 | 480 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:28:49 has no hits.
UFO07825.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:22:19 Download gff for
UFO07825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS18A-RA | 68..540 | 1..473 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:18:42 Download gff for
UFO07825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS18A-RA | 78..550 | 1..473 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:16 Download gff for
UFO07825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS18A-RA | 78..550 | 1..473 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:16 Download gff for
UFO07825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8561948..8562315 | 106..473 | 100 | <- | Minus |
| 3R | 8562412..8562515 | 1..105 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:18:42 Download gff for
UFO07825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4387670..4388037 | 106..473 | 100 | <- | Minus |
| arm_3R | 4388134..4388237 | 1..105 | 96 | | Minus |
