UFO07829.5prime Sequence
1122 bp (1012 high quality bases) assembled on 2011-07-14
> UFO07829.5prime
CAGTCGACATGGCCAGCACAGCGGTGGGACTGGGAGGCGGCGAAGGTGAC
CCCGGGGCGGGAGGACCGCCAGCGGGATCAGCGCATCCCGACGACGCCAG
CAGCATGAGCGACGACGTCTTCGAGGATGCGGAGACCACCCAGGCCAGGA
TCGAGGAGCTGCGTCGCCGGCCCTTTGGCGATGGCTCCTACAATCCCCCC
GCAGCGCCCGCCTCAGTTTCCGCCTCGATAACGACGACAACGACACAGCA
GCAGCAACAACATCACAATCCTTCGCATCACCACCAATCCTCGCACCACC
AACCATCCCACCACCATCACCACCACCACCACAGCCAGCTGAGTTTGACG
GGCAGCCATCACTACCACGACGATGCTATCATGGCGCCCGTTCAGCGCTC
GGCCACCGGATATCCTGGCTATCGTCCCTCCCGCGAGGCAATGCAGATGT
ATGCGTACGGAACGGATGACTACGACGATGACTATAACGATGGTTGGCGA
TCGTATCGCTACGATGAAGTGGACATGCACCCAGCCCCGTCCAACGCCCA
TCAGCAGCCCTTCGATGATACGGTTAACCACAAGACGATCCTGCTGGGGG
ATTCGGGCGTGGGAAAGACCTCCTTCCTGGTCAAATACAATACGGGCGAG
TTCCGACTGGGTTCCTTTTCCGCCACAGTGCGCATTGCGCTTACGAACAA
AGTGGTGGTCGTCGATGGAACGCGCGTCAAGCTGCAAATCTGGGACACAG
CTGGTCAGGAGCGATTCCGGAGCGTTACCCACGCCTATTATCGCGACGCG
CACGCTCTACTGCTGCTGTACGACGTGACCAACAAGACCACCTATGACAA
CATTCGCGCCTGGCTGGGCGAGATCCGGGAGTACGCGCAGGAGACGTGGT
CATCGTTTTATAGGCACAGCCGACTGCAGCGGCAGCGAGCGGCAGTGAAG
CGGGAGATGGGGAGCGTTTGGGGCGGAGCACACGTGCCCTTCATGGAAAC
CTCGGCCAGACGGGACTCAATGGGGAGCTGTCCTTCACAAGCGGTGGCCC
AGCACTTAATGAGTCCCGGCCTACGAGACACGGCGATGATGAAGGTCAAT
GCCATGTTCGCGTGAATACAAG
UFO07829.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:29:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab26-RG | 3355 | CG34410-RG | 1172..2273 | 9..1101 | 5020 | 97.7 | Plus |
| Rab26-RB | 2518 | CG34410-RB | 1172..2273 | 9..1101 | 5020 | 97.7 | Plus |
| Rab26-RE | 3311 | CG34410-RE | 1172..1860 | 9..697 | 3430 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:29:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21319945..21320631 | 9..695 | 3420 | 99.9 | Plus |
| 3L | 28110227 | 3L | 21332602..21332711 | 695..804 | 550 | 100 | Plus |
| 3L | 28110227 | 3L | 21333153..21333260 | 804..910 | 490 | 99.1 | Plus |
| 3L | 28110227 | 3L | 21333358..21333483 | 919..1039 | 350 | 94.4 | Plus |
Blast to na_te.dros performed 2014-11-27 00:29:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2361..2504 | 199..341 | 186 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2435..2548 | 225..339 | 184 | 67.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6832 | 238..343 | 165 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2419..2534 | 230..341 | 164 | 63.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2443 | 199..340 | 161 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6901 | 199..337 | 159 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..6927 | 199..331 | 159 | 60.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2451 | 238..365 | 156 | 61.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1067..1162 | 246..341 | 156 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6850 | 235..341 | 150 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6818..6924 | 235..340 | 145 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6764..6888 | 235..367 | 142 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6785..6892 | 235..337 | 140 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1501..1601 | 237..333 | 135 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2466..2537 | 235..305 | 132 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1519..1577 | 230..287 | 130 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2381..2467 | 245..331 | 129 | 60.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1073..1163 | 238..327 | 119 | 60.4 | Plus |
UFO07829.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:22:21 Download gff for
UFO07829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab26-RB | 1172..2279 | 9..1106 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:18:50 Download gff for
UFO07829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab26-RB | 1172..2279 | 9..1106 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:24 Download gff for
UFO07829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab26-RB | 1172..2279 | 9..1106 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:24 Download gff for
UFO07829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21319945..21320631 | 9..695 | 99 | -> | Plus |
| 3L | 21332603..21332711 | 696..804 | 100 | -> | Plus |
| 3L | 21333154..21333264 | 805..913 | 98 | -> | Plus |
| 3L | 21333350..21333494 | 914..1052 | 91 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:18:50 Download gff for
UFO07829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21313045..21313731 | 9..695 | 99 | -> | Plus |
| arm_3L | 21325703..21325811 | 696..804 | 100 | -> | Plus |
| arm_3L | 21326254..21326364 | 805..913 | 98 | -> | Plus |
| arm_3L | 21326450..21326594 | 914..1052 | 91 | -> | Plus |
