UFO07832.5prime Sequence
1133 bp (1006 high quality bases) assembled on 2011-07-14
> UFO07832.5prime
CAGTCGACATGCTAAATACCCGGCTAATTGCAATGTCGACTTCCGATGGA
GCCCCGGAAACCAAGAAACAACGTCCTGAAAGCAGCAGCAACGGCAGCAA
GGACCAAAACGGAACGGAAGCCGGCGCCGAAGGCGACTCCCGTGATAAAG
TGGCGCTGATAACAGGCATAACGGGCCAGGATGGCTCCTATTTGGCAGAG
TTTCTGCTCAAGAAGGACTACGAGGTGCACGGCATTATTCGGCGGGCCAG
CACCTTCAACACCACCCGCATTGAGCATCTATATGCCGATCCAAAGGCGC
ACAAAGGTGGGCGTATGAAGCTCCACTATGGCGACATGACGGACAGCAGC
AGCCTGGTGAAGATCATCAATATGGTGAAGCCCACGGAGATTTACAATTT
GGCAGCACAATCCCATGTCAAGGTCTCCTTCGATCTCAGTGAGTACACGG
CCGAGGTGGACGCCGTGGGCACGTTGCGCATTCTGGACGCCATCCGCACT
TGTGGCATGGAAAAGAACGTGAGGTTTTACCAAGCCTCCACTTCGGAGCT
ATATGGTAAAGTAGTGGAGACGCCACAGAACGAACAGACGCCCTTCTATC
CCAGGTCGCCATATGCCTGCGCTAAGATGTACGGCTTTTGGATCGTCATC
AACTACCGGGAAGCCTACAACATGTACGCCTGTAATGGAATCCTCTTCAA
CCATGAAAGTCCACGACGTGGCGAGAACTTTGTGACTAGAAAAATCACCC
GTAGCGTGACCAAGATTTATCACAAGCAAATGGAGTATTTTGAACTGGGA
AATCTCGACTCAAAGCGCGACTGGGGGACATGCCAGCGACTACGTGGAGG
CCATGTGGATGATGCTGCAACGGGAGTCTCCTTCCGACTACGTCATAGCT
ACAGGCGAACGCACAGTGTGCGCGAATTCGTGGAAGCCGCGTTCAAGCAT
ATTGATCGAGAAGATAACGTGGAAGGCCAGGGTGTGACGAGTGGGGAGTG
AGACGGCCACCGGGTTATTGTGCCGCGTCCGCATAATCAAGTAATTTCGG
CGAACGGAGAGTTCGATCTGCTGCAAGGCGACCGTCCAAGCAATCCGAGC
TAAAACTGAACGCTAAGTACTCTGGGAATGTAA
UFO07832.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:29:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gmd-RA | 1561 | CG8890-RA | 95..1202 | 9..1113 | 4845 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:29:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4976220..4976659 | 615..176 | 2185 | 99.8 | Minus |
| 2L | 23513712 | 2L | 4975800..4976160 | 976..615 | 1620 | 98.3 | Minus |
| 2L | 23513712 | 2L | 4976758..4976929 | 180..9 | 815 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:29:10 has no hits.
UFO07832.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:22:23 Download gff for
UFO07832.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gmd-RA | 84..1189 | 1..1104 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:18:55 Download gff for
UFO07832.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gmd-RA | 89..1194 | 1..1104 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:28 Download gff for
UFO07832.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gmd-RA | 89..1194 | 1..1104 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:28 Download gff for
UFO07832.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4975667..4976159 | 616..1104 | 94 | <- | Minus |
| 2L | 4976220..4976655 | 180..615 | 99 | <- | Minus |
| 2L | 4976759..4976935 | 1..179 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:18:55 Download gff for
UFO07832.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4975667..4976159 | 616..1104 | 94 | <- | Minus |
| arm_2L | 4976220..4976655 | 180..615 | 99 | <- | Minus |
| arm_2L | 4976759..4976935 | 1..179 | 96 | | Minus |
