UFO07833.5prime Sequence
1135 bp (1041 high quality bases) assembled on 2011-07-14
> UFO07833.5prime
CAGTCGACATGAATGCCAGTGAGAACTATTTCACGATGGACCCCACAGAG
AATATATCCCAGGTCTTAGACCAGAACAGAAACAACACAAATAGCCTGCG
AACACATCCCACTGTGGAAGAGTATTATGAGAACATGACCGCCTTCCTCA
GCCTGGCCATCTTCATAGCCAGCCTGCTGACCATCCTCAACATCAGCATC
TTCGCAACGACAGTCTCTCGGCTGCGTCGTCACCTGGACAAGCCGCTGCT
GGGTCCCTCGATTATGATGGTGGGCCTGTATCCGATTATCTCGGTGGCTG
CCCTGGTTACCATTCTGGTGCCGTACTCCTGGTTCATCTGCCATACGGTG
ATGCACGTTATGTTTATGGTCGGCGGACCTGTCTTCCGCACCCTGCTCTT
TCGTTACGTGGGCTCGGAGCAGAATTACGTGAAGGAGACGGCCGGCGAGG
CGGTGCAACTAAATACTCCTCCGTGCTGTTGCTGCTGCCTCTGCCTGCCG
ATGGTGATTCCCACCAAGGCGAAACTCTGCATCTCCAGATACATGGTATG
GCAAATGCCCTTCTGGCAGGGCTCCATTATGCTGGTGATGAACATCCTAT
ACTACCGGGACATTCAGCTCTACCGGCAGGTCATGTTCTTCTTCATCCCC
TTCATCGTCTGCTCCATTGTCTTGGGCGCTTGGTCCCTCCAAATCACTGT
GCGGATGATCACGAAGGTGCGCGGGGACTATCAGCTGAGAAAGAAGATGT
TCTGCCTCCAACTGGTGGTGATGCTTTGCAAACTGCAGTACCTGGTACTC
TATGATCAGCTGGACGGCATCAAAATGGGTGGGGAGTATCCCATTAATCA
CACCGTCTACAAGCAAACTATCATCAACATCCTTATCCTGTTGAAATGGT
TCTCGTATCCATGATGGTTCAAAGTGCATATCGTACTCCCGTTCAGTGCA
ATCGATGAGGTTAACAGGAAAGAGTTACTCGCATTGCAGCTTTCTAGACA
TTCGTTGGCGCGCGGGCCCAGGTAAGTGTCATATCATAATCATATCTAAT
CATAATCACACTAGCTAGGAGAATCTGTCATGAATAGGCTTGGATTCACA
ATAAAACGCCCGCGGCACCGGACTCTGACATCATG
UFO07833.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:29:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6836-RA | 1309 | CG6836-RA | 252..1235 | 9..985 | 4755 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:29:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18954254..18954671 | 133..550 | 2090 | 100 | Plus |
| 3L | 28110227 | 3L | 18954924..18955115 | 676..867 | 960 | 100 | Plus |
| 3L | 28110227 | 3L | 18954728..18954859 | 545..676 | 660 | 100 | Plus |
| 3L | 28110227 | 3L | 18953763..18953886 | 9..132 | 620 | 100 | Plus |
| 3L | 28110227 | 3L | 18955208..18955309 | 868..966 | 360 | 97.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:29:14 has no hits.
UFO07833.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:22:23 Download gff for
UFO07833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6836-RA | 239..1236 | 1..989 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:18:58 Download gff for
UFO07833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6836-RA | 242..1239 | 1..989 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:31 Download gff for
UFO07833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6836-RA | 242..1239 | 1..989 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:31 Download gff for
UFO07833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18953753..18953886 | 1..132 | 97 | -> | Plus |
| 3L | 18954254..18954666 | 133..545 | 100 | -> | Plus |
| 3L | 18954729..18954859 | 546..676 | 100 | -> | Plus |
| 3L | 18954925..18955115 | 677..867 | 100 | -> | Plus |
| 3L | 18955208..18955336 | 868..989 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:18:58 Download gff for
UFO07833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18948025..18948215 | 677..867 | 100 | -> | Plus |
| arm_3L | 18946853..18946986 | 1..132 | 97 | -> | Plus |
| arm_3L | 18947354..18947766 | 133..545 | 100 | -> | Plus |
| arm_3L | 18947829..18947959 | 546..676 | 100 | -> | Plus |
| arm_3L | 18948308..18948436 | 868..989 | 93 | | Plus |
