UFO07835.5prime Sequence
1118 bp (984 high quality bases) assembled on 2011-07-14
> UFO07835.5prime
CAGTCGACATGAACTCGATGTGGTGGCCGCCAAATAAATCATTCGCCGGA
TTCGCCCACCAGGCCCTCTTCCTGCTCCTTTCCACGCTGGCCACATTCAA
TTACGTCATGGCCACTTTGACTGGTCCCGGACTGATGCCAAAACAGTGGC
ATCCCAAGGATCCCAAGGACGCCCAGTTCCTGCAGTACTGCAAAAAGTGC
GAGGGCTACAAGGCACCACGCTCCCATCATTGTCGCAAGTGTGATCGCTG
CGTCAAGAAGATGGACCATCACTGCCCATGGATCAATCACTGCGTTGGCT
GGGCCAACCACGCGTACTTCACATACTTCCTGCTCTTCTCCATCCTGGGC
AGCCTGCAGGGCACCGTGGTGCTGTGCTGCTCCTTCTGGCGGGGAATCTA
CCGCTACTACTATCTCACCCACGGATTGGCGCACTTGGCTAGCGTGCAGT
TCACTCTGCTCAGCATCATCATGTGCATTCTGGGCATGGGCCTGGCCATC
GGTGTCGTCATTGGCCTGAGCATGCTGCTGTTCATTCAGCTGAAGACGAT
TGTAAACAACCAGACGGGCATAGAGATCTGGATAGTGGAGAAGGCCATTT
ACCGCCGATATAGGAATGCCGACTGCGACGACGAGTTCCTATATCCCTAT
GATTTGGGCTGGCGGGCAAATTTGCGACTGGTATTCAATGACGAGTGCCA
AAAGCGAGGCGATGGCATCGAGTGGCCAGTGGTGGAGGGTTGTGATCAGT
ATACATTGACGCGCGAGCAACTGGCGCAGAAGGAGGAGAAACGAGCTCGA
ACCCGCACCTTCAAATGCACAAGGCCAGTGACTGGCCGTTGGCTGCCGAT
CTTTTCGCAGGTTGGCGTGTTTGTGTGGCCGCTCCCTGCTCCGATGAGCC
ACGCATCAGCCTGCGACCCACGACATGATTAAGGTCACTTCGCTTCCGCC
ACCACTGGCTGTTCGCGAAGCGGAGTGCTTTCCGAACAGAAGCTAGCTTG
GCGGTCAAGAAACGCCCACGCAAGGTCCCAATTCTTGCTGTTCCACGAAC
CCAGCGCCTTTGAGGTCATGAGGCGTCCTGTAGGCACGGCGATGCAAACC
GGAAACCACGATCTTGCG
UFO07835.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:28:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5196-RB | 2023 | CG5196-RB | 537..1626 | 9..1094 | 4885 | 97.4 | Plus |
| CG5196-RA | 1679 | CG5196-RA | 193..1282 | 9..1094 | 4885 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:28:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12410460..12410980 | 241..761 | 2605 | 100 | Plus |
| 3R | 32079331 | 3R | 12411034..12411296 | 761..1025 | 905 | 93.6 | Plus |
| 3R | 32079331 | 3R | 12409290..12409440 | 9..159 | 755 | 100 | Plus |
| 3R | 32079331 | 3R | 12410273..12410358 | 157..242 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:28:41 has no hits.
UFO07835.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:22:18 Download gff for
UFO07835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5196-RB | 529..1513 | 1..985 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:18:39 Download gff for
UFO07835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5196-RA | 185..1169 | 1..985 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:12 Download gff for
UFO07835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5196-RA | 185..1169 | 1..985 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:12 Download gff for
UFO07835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12409282..12409439 | 1..158 | 97 | -> | Plus |
| 3R | 12410275..12410356 | 159..240 | 100 | -> | Plus |
| 3R | 12410460..12410980 | 241..761 | 100 | -> | Plus |
| 3R | 12411035..12411258 | 762..985 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:18:39 Download gff for
UFO07835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8235004..8235161 | 1..158 | 97 | -> | Plus |
| arm_3R | 8235997..8236078 | 159..240 | 100 | -> | Plus |
| arm_3R | 8236182..8236702 | 241..761 | 100 | -> | Plus |
| arm_3R | 8236757..8236980 | 762..985 | 96 | == | Plus |
