UFO07840.5prime Sequence
1126 bp (1032 high quality bases) assembled on 2011-07-14
> UFO07840.5prime
CAGTCGACATGGAGATTGACTTGGGATTTGCGGAAAAGAGCGACAATGGC
GCCTGGCTGAGCAACCGCTACTTTCCCAGCAAGCTGGGTGGCCAGCCCGC
ATGGCTGGAACTGGAGGCCTTGCCGCCCACGTCGCAGCTGCAGTGCAGCA
AGTGCAGGGCACCCAAATCCTTCCTGGCTCAGCTATACGCTCCCTTCGAA
GACGAGTACAACTTTCATCGGTCCATCTATGTGTTCCTGTGCCGGAATTC
CGACTGCCAGGAGGCCCAAAATGCAAGCAATTTCACAGTCCTCAGGTCAC
AGTTGCCGCGAAAGAATAAGTTCTTTTCGGAGGAGGAGCCGAGCGACGTG
GGTCAACCCCTGCCCGCCGTTCCCTGCCTAAAGAAACTATGCGCCGCCTG
CGGTTGCCATGCTCCCCACGCCTGCAGCAAATGCAAGGCTATCCACTACT
GCTCACCAGAGCATCAAAGGGCCCACTGGCCACAACACAAGCCAAACTGC
GGAGCACCAGAAGTAGCCACTGAGAAGCCCTTAACACAAATCGTTTTCCC
AGAATTTGAGATTGTAATGGACAGCAACCCCGTGGAGTCTGGCGAGGAGG
ACAAGGACGATGAGGCTCGCTTGGCGGAGTTCCAGGAGCTGGAGTCCAGC
GGGAAGACGGGCGACTTGAGCAATGTTTCCGAGGCGGAAATGGACAAGTA
CTTCGGAAACTCGGCGGCCGCCGATGACAAGACCTTTCGTCAGTTCAAAA
AGCAAACAGCAGCCGAACCCGATCAGATCGTGCGCTACAAACGTGGAGGC
CAGCCCCTCTGGATCACGAATACCGTCAAAACGGTGGAGGACCAACTTAA
CAAGCTGCCCAATTGCATTGCTTGCGGAGAGAGCGTCAGTTCGAATTTCA
GATTATGCCGCAAGCGCTGACTCTTCTGGAGGACGAAAACCTCGACTGGG
GCGTCCTGCCGTCTACACCTGCGCCAAAAGCTGCCCCATCGACGGCTACG
TGGAGGAGCTTCTCATCAGCAGACATTGTGGCGGAGGATCCGAGTGCAAG
CTTCTAGAACATCGTTGGCGGCGCGGGCCAGGTATGCTTATCTATTAAAT
CCTAACTAATCCACTGCCTAGGAGTC
UFO07840.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:29:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zfrp8-RB | 1090 | CG3260-RB | 28..1068 | 9..1045 | 5000 | 98.9 | Plus |
| Zfrp8-RA | 1306 | CG3260-RA | 28..1068 | 9..1045 | 5000 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:29:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24134480..24135167 | 362..1045 | 3165 | 98.7 | Plus |
| 2R | 25286936 | 2R | 24134016..24134284 | 9..277 | 1330 | 99.6 | Plus |
| 2R | 25286936 | 2R | 24134340..24134426 | 276..362 | 420 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:29:37 has no hits.
UFO07840.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:22:28 Download gff for
UFO07840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zfrp8-RA | 9..1052 | 6..1045 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:19:10 Download gff for
UFO07840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zfrp8-RA | 25..1068 | 6..1045 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:41 Download gff for
UFO07840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zfrp8-RA | 25..1068 | 6..1045 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:41 Download gff for
UFO07840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24134013..24134284 | 6..277 | 99 | -> | Plus |
| 2R | 24134342..24134426 | 278..362 | 98 | -> | Plus |
| 2R | 24134481..24135162 | 363..1040 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:19:10 Download gff for
UFO07840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20021536..20021807 | 6..277 | 99 | -> | Plus |
| arm_2R | 20021865..20021949 | 278..362 | 98 | -> | Plus |
| arm_2R | 20022004..20022685 | 363..1040 | 98 | == | Plus |
