UFO07842.5prime Sequence
1117 bp (1013 high quality bases) assembled on 2011-07-14
> UFO07842.5prime
CAGTCGACATGTCTATTTTCAAGGCGCGAGTCAAGGAATTTGAGGATGTT
TTGGCGGGGCCACAGGATTTAATTGACCTGAAACAACTCAGGAAACTGGC
ATTTAATGGTGTGCCCGATGTGCAGAGTTTTCGAGCACTCAGTTGGAAGC
TACTCCTTGGCTATTTGGGGCCTAGGCGCAGTAGTTGGACCACAACCTTG
GCCCAAAAGCGAGCCCTGTATAAACAGTTCATCGAGGAGCTAGTCCTGCC
CCCCGGACACTCGAGCAATAGAGCTAGCGTAGACGGAGGAGATGGGGACA
AAGTCGATTCGGGGGGCGTTGGCCTGCAAGATCATCCGCTGAGCGAGGGA
CCCGAAAGCGCGTGGAACACGTTCTTCAATGATAACGAGTTTCTACTGCA
AATCGACAAGGATGTCCGCCGCTTGTGCCCGGACATATCCTTTTTCCAGC
AGCCCACCGATTATCCCTGCGAGATTGTGGTCCACAGCAAAGGAGAGCAT
GGACGAAGGCTCCACGAACGGGTGGTTCCCGCCGTTCTAAGTTCGGCGAA
TGTGGAACGCAAGGGCCTCGGCATGACAAAGATAAATTTGATTACAAAAC
GCTCCGTTGAAAACTATGCCGCCATGGAGGAGGGCCAAGAGGCTCACTGG
GAAGTTGTGCAACGCATTTTGTTCATCTATGCCAAACTAAATCCCGGCCA
GGGATATGTCCAGGGCATGAACGAAATCGTGGGACCCATTTACTATGTTA
TGGCCTCCGATCCTGACCTCACATATCGCGCCCACGCTGAGGCTGATTGT
TTCTTTTGTTTTACCGCCCTGATGAGCGAGATAAGAGACTTTTTTATTAA
AACACTAGACGACGCAGAACGCGGCATCAAGTTCATGATGGCCAGGCTAT
CGAATATGCTGAAATCAAAGGACCTAAGCATTTACGAGCTACTCAGAGCC
AGAGCTGCATCCGCAGTATTACAGCTTCAGGTGGCCCCAACCTGCTCCTG
TCGGCAGAGTTTCCACTGCCAGATGTACTGCCGCATTAGGGAATTCCGTG
TTTGCGGACCGAACAGGATTGATTTTTCTGATAAAATATGCCTGTTCCAA
TGAAATTATCCAGGAGC
UFO07842.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:29:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GAPsec-RA | 1544 | CG5978-RA | 127..1225 | 8..1108 | 5095 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:29:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8623077..8623550 | 581..108 | 2370 | 100 | Minus |
| 3L | 28110227 | 3L | 8622458..8622936 | 1059..580 | 2040 | 97.3 | Minus |
| 3L | 28110227 | 3L | 8623606..8623688 | 110..28 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:29:45 has no hits.
UFO07842.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:22:29 Download gff for
UFO07842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5978-RA | 107..1219 | 1..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:19:14 Download gff for
UFO07842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GAPsec-RA | 118..1230 | 1..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:46 Download gff for
UFO07842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GAPsec-RA | 118..1230 | 1..1112 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:46 Download gff for
UFO07842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8622411..8622934 | 582..1107 | 96 | <- | Minus |
| 3L | 8623077..8623549 | 109..581 | 100 | <- | Minus |
| 3L | 8623608..8623687 | 29..108 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:19:14 Download gff for
UFO07842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8615511..8616034 | 582..1107 | 96 | <- | Minus |
| arm_3L | 8616177..8616649 | 109..581 | 100 | <- | Minus |
| arm_3L | 8616708..8616787 | 29..108 | 100 | <- | Minus |
