UFO07844.5prime Sequence
1174 bp (1054 high quality bases) assembled on 2011-07-14
> UFO07844.5prime
CAGTCGACATGTCAGATAAGATGAAAATGAGCCTTGACGACATTATCAAG
ATGAAATTTAATAAGAACAAGTTTGTTAATGCCAAAAATGAACGTGTTCA
AGGAGGATCGATCAGAAAGCGAAATTCAGAAGGCGGACTTAGAGGAATTC
AAAGGTCCCGCAACGGAACTGGATTCATTCGGAAGAGCAAATTCAAACAG
GAAACCCTTTTGAAGCCGCCAAAAAAACCGACTCTTGTCATGGTTTGCAA
TTTGGATTACGGAGTGGATGATGACGACATCATGGAGCTTTTCAATCAAG
ACGGCGTGGTGGAGAAAGGTTTTGTGCACTATGATCGCGATGGTAACTCA
TTGGGCACCGCTCACTTGTCGTTCAAATATCGCGAAGAGGCCTTCCAGAT
CATCGAGCAGTTCCACGGAGTCCGTTTGGATGGACGCCGATTGAAATTAC
ATCTCGTACAAAACACAAGAAATTTTAAACGCACTGATGTCGATGATCTT
TCCTTGCGGATGGGTTCTTTCAAGACTCGTTTCTTGCAGAATGGTACTTT
TAAGACTCGTTCCTTGCAGAATGGTTTTCAGAAGTCTCGTCTTTTTCGCA
ATAGTTCCTTCAAGCCTCGTCCTTTCAAGAAACATAACTTTAAGTCTCGA
GCGTTCGATACTGATTTCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCG
GGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACA
ACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATA
AAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTC
TGAGGTCATTACTGGATCTATCAACAGGAGTCCAGCGAGCTCGATATCAA
ATTACCGCCCCGCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGC
ATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGATCGCC
AGCGCATCAGCACCTTGTCGCTTGGCGTATAATATTTGCCCATGGTGAAC
CGGGGGAAGAAGTTGTCCATATTGCCACGGTTAATTAAACTGGTGAAACT
CACCAGAATGCTGAAACGAAACCATTCCCATACTTAGGGCAATGGCAGTT
CACGTAACGCCAATCTTGGCGAAT
UFO07844.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:29:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ref2-RC | 1717 | CG17031-RC | 851..1512 | 7..668 | 3310 | 100 | Plus |
| Ref2-RB | 1511 | CG17031-RB | 645..1306 | 7..668 | 3310 | 100 | Plus |
| Ref2-RA | 911 | CG17031-RA | 45..706 | 7..668 | 3310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:29:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12610722..12611383 | 668..7 | 3310 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:29:53 has no hits.
UFO07844.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:22:30 Download gff for
UFO07844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ref2-RA | 16..694 | 1..681 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:19:18 Download gff for
UFO07844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ref2-RA | 41..719 | 1..681 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:50 Download gff for
UFO07844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ref2-RA | 41..719 | 1..681 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:50 Download gff for
UFO07844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12610709..12611387 | 1..681 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:19:18 Download gff for
UFO07844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12610709..12611387 | 1..681 | 98 | | Minus |
