UFO07845.5prime Sequence
1128 bp (1034 high quality bases) assembled on 2011-07-14
> UFO07845.5prime
CAGTCGACATGGCGACAAGGTCTTGTGCGTACAAGGACTGTGAATACTAT
TACGTAGGCCACGAAAACGCGCTGACCAAAGGAAGAACCCTGTTTGCCTT
TCCCAAACAACCGCAAAGGGCGAGAATCTGGCACGAAAACGGCCAAGTGC
ATCCAAAGATTCCCCATAGCCAGCTTTTTATGTGCTCCCTTCACTTTGAC
CGCAAGTTCATATCCTCCTCTAAGAACCGAACGCTCCTCGTCGGCGAGGC
AGTGCCGTTTCCGTACGAGGAAAGCAGTAGCAAGCCGGAGGAGGAGCCCC
AACAAGTGGCTTCCACTTCGCATGAGAGCTACTATATAAACCTGAGCGAC
GATGAGCTCAGCATCAACAATGTGGACACTACCTCAGTTACTACAATTGA
CGCAGTCCACGATAGTCCACCGCAGAAGCGCCCGAAGGAATCTTCCATTG
TCATTGCTCTAAAGGAAGCTGTGAAAATGGAACCCAATCCGAATGCAGGC
CGAGTTAGAGCAGAACCCGACAATATAGATACTACTGAAGTGTCTGTGTT
CAACTTCAAGGGACAGGAGTACGTACAAATGTCTATGGAGTATTACTTGC
AGGAAAAGCGGAAAATGGCTAAACTTTTGCAAGACTATAAAAATGCTTTA
AGAAGCATTAAGAAACATATTTCCCACCTTGACCTTGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATA
ATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTG
CTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAA
CAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTC
CAAGCGAGCTCGATATCAAATTACGCCCCCGCCCTGCCACTCATCGCAGT
ACTGTGTAATTCATTAAGCATTCTGCCGAACATGAAGCCATCAAAACGGC
ATGATGAACCTGAACCCCAGCGGCATCAGCACTTGTCGCTGGCGTTTTAA
TATTGCCATGGTGAAACGGGGCGAGAAAGTTGTCATATTGTCAGTTAATT
CAACTTGGTAACTCACCAGAATGCCTGA
UFO07845.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:29:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dip2-RA | 903 | CG9771-RA | 88..765 | 9..686 | 3390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:29:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4645181..4645568 | 396..9 | 1940 | 100 | Minus |
| 3R | 32079331 | 3R | 4644787..4645076 | 686..397 | 1450 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:29:57 has no hits.
UFO07845.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:22:31 Download gff for
UFO07845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dip2-RA | 27..711 | 9..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:19:20 Download gff for
UFO07845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dip2-RA | 88..772 | 9..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:50 Download gff for
UFO07845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dip2-RA | 88..772 | 9..695 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:50 Download gff for
UFO07845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4644780..4645076 | 397..695 | 98 | <- | Minus |
| 3R | 4645181..4645568 | 9..396 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:19:20 Download gff for
UFO07845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 470502..470798 | 397..695 | 98 | <- | Minus |
| arm_3R | 470903..471290 | 9..396 | 100 | | Minus |
