UFO07846.5prime Sequence
880 bp (879 high quality bases) assembled on 2011-07-14
> UFO07846.5prime
CAGTCGACATGACCAGCCTAACCGCAGTTTTCCAGATGGCGAGGCAGCGA
TTGATAGCCCCAGCGATAGGAAACTGGGCACGTTTTTATGCTGCAAAACC
GGCGGCGCCAGCGGGCAAGAAGAAAAAGCTTGGCAAGCTGGGTCCCATCA
TGGAGAAGAAAGTCATACCCGTGGAAACGGATGCCAACAAATTGGTGAAC
TATGTATGCGGAAGTAACTACATGAAAACAGGAGAAGATATCAAAATTAA
ACCGGATTCGGAATACCCCGACTGGGTGTGGACGCTGAATACGGAAGGCA
TCGTTCCGCTGGACGAACTGGACCCCAACTCCAAGCAGTACTGGCGCCGT
CTGAGGAAACTGGCCTTGCGGCGCAACAATCAGCTGTCCAAGCTAAAGAA
GTTCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTG
GTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGA
TCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCG
GCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTG
GATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCC
CTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACAT
GGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGC
ACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAA
GAAATTGTCCATATTGGCCACGTTTTAAATCAAACCTGGTGAAACCTCAC
CCAGGGATTGGCTGAGACGAAAAACATATT
UFO07846.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:29:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL54-RA | 682 | CG9353-RA | 122..520 | 6..404 | 1905 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:29:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21061270..21061425 | 249..404 | 720 | 97.4 | Plus |
| 2R | 25286936 | 2R | 21061070..21061206 | 109..245 | 670 | 99.3 | Plus |
| 2R | 25286936 | 2R | 21060910..21061015 | 6..111 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:29:18 has no hits.
UFO07846.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:22:24 Download gff for
UFO07846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL54-RA | 127..530 | 1..404 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:19:00 Download gff for
UFO07846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL54-RA | 117..520 | 1..404 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:32 Download gff for
UFO07846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL54-RA | 117..520 | 1..404 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:32 Download gff for
UFO07846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21061267..21061425 | 246..404 | 96 | == | Plus |
| 2R | 21060905..21061015 | 1..111 | 97 | -> | Plus |
| 2R | 21061073..21061206 | 112..245 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:19:00 Download gff for
UFO07846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16948410..16948520 | 1..111 | 97 | -> | Plus |
| arm_2R | 16948578..16948711 | 112..245 | 99 | -> | Plus |
| arm_2R | 16948772..16948930 | 246..404 | 96 | == | Plus |
