UFO07848.5prime Sequence
1098 bp (991 high quality bases) assembled on 2011-07-14
> UFO07848.5prime
CAGTCGACATGAATCGCGGCCAGCTTTTAGTTTTGTGCATTTTTGCCACT
GGAATTTCCCTTTCGATGGGTTTTCCCCAGGACGATCTAATTAAGCCGGG
TAGTGACGAATCGGATGTGAGTGGCATTGGCTTCGTGACGCTCGACGGAA
CGGCCAGCGAAGAGAGTGACGAAAGCGACCAAGGCAACGCGTCCGATGAT
TTGATATTTTTGAGTCGCCAAAAGCCAAGTCCGGTCAACAATTCCGTCGA
TTTGAGCGCCTTTGTGGCACTGATTCCTCTGCAAGAAGTCCAGTCCATTG
CTGCTCACTATTATCATCATGATGCGGAGTTTCAAAGGTCGTACGCCTTT
CTCGCCAGCAGCGATTTCGCGGACATCAAGCGGAAAATACTTCAGCTGCC
GGAAGTGCTGGAGTTCACCAACTATCTGGGTAACAATGGACTAGATGTCG
TCAAGGTGATGCATTCGGTGGCAGGAGTGTTCAAACCGTCCATTCTGAGC
TCCGCAGCGGTCAACGAGCCAACAAAAGTCACAACCACCGAAGATGGCAG
CTCCGCCGCTGGAGAAGCACAAACTGGCCTCCATGGAATGGTGGAGAGGG
TCCTGGAAATTCTGCCGCAGGACCAACTGTACGCCCTATTCTTCGACGAG
TTTGAGAGCAACAAACAGTTCGCAGCATTTGTCGACAGCATTAGCAGTCC
AAAGTTTGCCAAGATTTTGAGCGGTTTGCAGAACTCAATGCCGTTGCGAA
ATCTACTATTTGTCCTGCACAATAACAGTATCTATGTGGAGCGGATTGTG
GAGTCCGTAAAATCGTATCTATCCATTTCCAGTTTTGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTTCATAATCATAATCAT
AATCATAATCATAATCACACTAGCCTAGGAGAATCCTGGTCATGACTAGT
TGCTTGGATTCTCACAATAAAAAACGCCCGGCGCACGAGCGTCTTGACAA
ATCCAGATGGAGTCTGGAGTCATTACTGGAATCCTATCAATGAAATTCAA
GCGAGCTCGATTCATTCACGCCCCCGACCCTGCATTCATCGCAGTACT
UFO07848.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:29:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4409-RB | 939 | CG4409-RB | 40..867 | 9..836 | 4140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:29:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16443250..16443757 | 9..516 | 2540 | 100 | Plus |
| 2R | 25286936 | 2R | 16443907..16444122 | 516..731 | 1080 | 100 | Plus |
| 2R | 25286936 | 2R | 16444666..16444773 | 729..836 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:29:25 has no hits.
UFO07848.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:22:26 Download gff for
UFO07848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4409-RB | 11..848 | 1..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:19:04 Download gff for
UFO07848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4409-RB | 36..873 | 1..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:36 Download gff for
UFO07848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4409-RB | 36..873 | 1..845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:36 Download gff for
UFO07848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16443246..16443757 | 1..516 | 99 | -> | Plus |
| 2R | 16443908..16444122 | 517..731 | 100 | -> | Plus |
| 2R | 16444669..16444779 | 732..845 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:19:04 Download gff for
UFO07848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12330751..12331262 | 1..516 | 99 | -> | Plus |
| arm_2R | 12331413..12331627 | 517..731 | 100 | -> | Plus |
| arm_2R | 12332174..12332284 | 732..845 | 96 | == | Plus |
