UFO07852.5prime Sequence
999 bp (978 high quality bases) assembled on 2011-07-14
> UFO07852.5prime
CAGTCGACATGGCAGCTGCACTGCCAGATCGGTTTAGTGCGGGCAAACGG
CAGTTCTGGCGCGAGTTTCTGGCCCTTTATCAGGGAATGCCAGAGCTGTG
GGACGTCCACCACCTCAATTACCGGAACAAGGAGTTGCGAAACCGGGCGT
ACGAGTTGCTGGAGAGGAAACTACGGGAGATACAGCCGAACGCTACGCGC
ACAGAAGTCGGCAGGCGCATCAACATATTTCGCACCAATTACAGGCGGGA
GCAGATGCGAATCCTCAAGCAGAAGGAGCTGGGGCTGCACTCTGATCTCT
GTAAGCCGACGCTCTGGTTCTACGACTACATGGGATTTCTCCTCACCCAG
GAGACCTTCCAGCACAGGACCAGAAAAGGTCGGGGCGGCAGACAGAAGCA
AGATTTTCGCAGGGAAAAGGATGACAAATACCCCTTGAAAAATCCAGATC
TCAACACGGAAAGCGTTTGTGATTGGCCGATCAAGGATGATAACGCTTTC
AACTACCAGTCCGAACCGACTGCCCCGCAATCCGAAGAGGGTTCCCTGCT
CAGTCCAAAATTGGAGATCATAGAGCCGGAAGAAGGGCAGTGTGAAGTCA
AAGAGGAAAATAGTTTGGGAAATTCATTGGAAACGAAAGAACCCACATCC
TCGATTCAAACAGATCCCGAGAACGAACGAGGAACTGCACCCATGCAACT
CAGCGAGTCCTCCGAAGTTCTGGCCAGATCCTGGGCTATCCAGTACGAGG
AAATGTCCCCCACGCAACGGATTCTGGCACGAAAAGGCCATCGCAGACAT
CCTGTTTGAGGGATGCATGGGCAACCTGCGAGTAACCGCGGCGAACCAAC
AGAGCACCGTGGCCAAATCATTTCGCAAGCTTTTCTAGACCATTCGTTTG
GCGCGGCGGGGCCCAGGTAAGTTGTCCCTGATCATTAATCATAATCATAA
ATCATAATCCACCACCTAGCCCTAAGGAAGAATCCTTGTTCATGAACTA
UFO07852.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:30:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3386-RD | 1494 | CG3386-RD | 206..1069 | 9..874 | 4160 | 99 | Plus |
| CG3386-RC | 1508 | CG3386-RC | 446..1309 | 9..874 | 4160 | 99 | Plus |
| CG3386-RB | 1446 | CG3386-RB | 384..1247 | 9..874 | 4160 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:30:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 680861..681310 | 874..423 | 2050 | 98.9 | Minus |
| 3L | 28110227 | 3L | 681372..681786 | 423..9 | 2015 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:30:13 has no hits.
UFO07852.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:22:34 Download gff for
UFO07852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3386-RA | 330..1210 | 1..883 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:19:28 Download gff for
UFO07852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3386-RB | 376..1256 | 1..883 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:57 Download gff for
UFO07852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3386-RB | 376..1256 | 1..883 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:57 Download gff for
UFO07852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 680871..681310 | 423..863 | 99 | <- | Minus |
| 3L | 681373..681793 | 1..422 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:19:28 Download gff for
UFO07852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 680871..681310 | 423..863 | 99 | <- | Minus |
| arm_3L | 681373..681793 | 1..422 | 98 | | Minus |
